Column names |
X-platform ID |
description |
submitter |
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|
|
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| Affymetrix | no | Affymetrix Probe Set ID. | |
| AGI | yes | AGI DI, a uniform, gene nomenclature system for Arabidopsis created by the Arabidopsis Genome Initiative (AGI). AGI is an international effort to sequence the complete Arabidopsis genome. AGI ID's are based on the following format, At = organism 1, 2, 3, 4, 5 = chromosome g = gene 00010 = gene id. | |
| EC | no | Enzyme Commission number (EC number). | |
| Ensembl | yes | EnsEMBL ID, a transcript identifier from the ENSEMBL project. | |
| Entrez | no | IDs and symbols are extracted from Entrez Gene. | |
| FlyBase | yes | A locus name from FlyBase, a database of the drosophila genome. | |
| GO | no | Gene Ontology (GO) terms. | |
| InterPro | no | InterPro ID. InterPro is a database of protein families, domains, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences. | |
| MGI | yes | MGI ID, a locus identifier from the Mouse Genome Informatics (MGI) database. | |
| OMIM | no | ID in OMIM, Online Mendelian Inheritance in Man. This gives a link to the gene's description in Online Mendelian Inheritance in Man, a hand-curated database of disease and genetic disorders, biomedical and biochemical information, and phenotypes associated with known human genes. OMIM indexes give the NetAffx user access to detailed descriptions of biomedical research associated with their genes of interest. Only available probe sets to human genes. | |
| Pathway | no | Displays the GenMAPP pathway if the transcript has been found to play a role in a proteome functional pathway in the GenMAPP collection. | |
| QTL | no | (Quantitative Trait Loci) Genetic linkage data that provide disease associations for some loci. This data comes from RatMap at the Rat Genome Database; so these annotations only appear on Rat arrays. | |
| RefSeq Protein ID | yes | ID of the protein sequence in the NCBI RefSeq database. | |
| RefSeq Transcript ID | yes | References to multiple sequences in RefSeq. | |
| Representative Public ID | yes | The accession number of the representative sequence on which the probe set is based. For UniGene based arrays, this is usually a GenBank, dbEST or RefSeq accession used for sequence selection. Refer to the Sequence Source field under the Sequence section to determine the database used. | |
| RGD | yes | RGD ID, a locus from the Rat Genome Database (RGD). | |
| SGD | yes | SGD accession number, a locus from the Saccharomyces Genome Database (SGD). | |
| SwissProt | no | SWISS-PROT (sometimes known as SWALL) accession numbers of the peptide sequences corresponding to the mRNA's in the UniGene cluster represented by the probe set. | |
| Trans Membrane | yes | yes | |
| UniGene | yes | UniGene ID is for the UniGene collection of sequences. | |
| WormBase | yes | A locus name from Wormbase, a database of the genome and biology of C. elegans. | |
| XDB | yes | Xenopus Gene Database provides mappings between XGD IDs and Affymetrix probe set IDs. | |