1. Introduction

Use Summary

2. Publications

1. Xia X, McClelland M, Wang Y. WebArray: an online platform for microarray data analysis. BMC Bioinformatics. 2005, 6(1): 306.     [Abstract] [Full Text] [PDF]

The WebArray can be cited in Endnote format (download HERE), or in BibTex format:


@Article{WEBARRAY,
  author = {XiaoQin Xia and Michael McClelland and Yipeng Wang},
  title = {WebArray: an online platform for microarray data analysis},
  journal = {BMC Bioinformatics},
  volume = {6},
  year = {2005},
  pages = {306},
  url = {http://www.biomedcentral.com/1471-2105/6/306}
}

2. Wang Y, McClelland M, Xia XQ. Analyzing microarray data using WebArray. Cold Spring Harbor Protocols. 2009(8): pdb.prot5260. doi:10.1101/pdb.prot5260.     [Abstract] [Full Text]

Citation in BibTex format:


@article{YipengWang08012009,
  author = {Wang, Yipeng and McClelland, Michael and Xia, Xiao-Qin},
  title = {{Analyzing Microarray Data Using WebArray}},
  journal = {Cold Spring Harbor Protocols},
  volume = {2009},
  number = {8},
  pages = {pdb.prot5260-},
  doi = {10.1101/pdb.prot5260},
  year = {2009},
  URL = {http://cshprotocols.cshlp.org/cgi/content/abstract/2009/8/pdb.prot5260}
}

3. Xia XQ, McClelland M, Porwollik S, Song W, Cong X, Wang Y. WebArrayDB: Cross-platform microarray data analysis and public data repository. Bioinformatics, 2009, doi:10.1093/bioinformatics/btp430.     [Abstract] [Full Text].

Citation in BibTex format:


@ARTICLE{Xia2009,
  author = {Xiao-Qin Xia and Michael McClelland and Steffen Porwollik and Wenzhi
	Song and Xianling Cong and Yipeng Wang},
  title = {WebArrayDB: cross-platform microarray data analysis and public data
	repository.},
  journal = {Bioinformatics},
  year = {2009},
  volume = {25},
  pages = {2425--2429},
  number = {18},
  month = {Sep},
  doi = {10.1093/bioinformatics/btp430},
  institution = {Vaccine Research Institute San Diego, San Diego, CA 92121, USA. xqxia70@gmail.com},
  keywords = {Computational Biology, methods; Information Storage and Retrieval,
	methods; Internet; Microarray Analysis, methods; Software; Statistics
	as Topic; User-Computer Interface},
  language = {eng},
  medline-pst = {ppublish},
  owner = {xxia},
  pii = {btp430},
  pmid = {19602526},
  timestamp = {2010.07.13},
  url = {http://dx.doi.org/10.1093/bioinformatics/btp430}
}

3. Program Download

WebArray is under GNU GPL, you may download the WebArray source codes following the links below. WebArray is under maintaining actively and might be modified/upgraded frequently. This is revealed by the software's packing date since we intend to not change the version number too often. Please read the "README" file especially when you are upgrading from a old distribution.

Tutorials, data for demo, and README
WebArray-1.4 (with WebArrayDB): webarray-1.4.tar.gz (packed on 2022-08-30 12:47)
WebArray-1.3 (with WebArrayDB): webarray-1.3.tar.gz (packed on 2010-10-02 06:52)
WebArray-1.1: webarray-1.1.tar.gz and README (packed on 2008-06-18 03:08)

4. News

2008/3/17	WebArrayDB (in BETA testing) - a cross-platform database system and analysis platform was integrated in. Any feedback is highly appreciated.
2007/08/18	Microarray databases (WebArrayDB) were designed and are on testing.
2006/10/19	R was upgraded to version 2.4.0. Accordingly Bioconductor was upgraded to version 1.9. More Affymetrix GeneChip types are supported.
2006/10/19	The interface between python and R language was switch from Rpy to pipe offered by python. This permits R to run faster.
2006/02/03	Gal file is no longer necessary for those data files with gene & grid information.
2006/02/03	Source codes are available for downloading.

5. Contacts

For questions, please contact with Xiao-Qin Xia ( w e b a r r a y d b @ g m a i l . c o m