FECO id Label Parent id Definitions Source FECO:0000100 experiment factors The state in which an organism exists. ZECO FECO:0000104 experimental conditions FECO:0000100 Condition in which variables of the experiment are manipulated to determine the variables effect by comparing to a control condition. ZECO FECO:0000105 biological treatment FECO:0000104 Experimental condition in which the organism is treated with a microorganism. ZECO FECO:0000106 bacterial treatment FECO:0000105 "Biological treatment in which fish have been infected with bacteria. This infection can be done by addition of bacteria in the water or by injection of bacteria, (for example in the brain ventricle, in the caudal vein, in the yolk sac), or ingestion, or other means." ZECO FECO:0000107 fungal treatment FECO:0000105 Biological treatment in which fish have been infected with a fungus. ZECO FECO:0000108 germ free FECO:0000105 Biological treatment in which fish were raised in the absence of bacteria. ZECO FECO:0000109 protozoan treatment FECO:0000105 Biological treatment in which fish have been infected with protozoa. ZECO FECO:0000110 viral treatment FECO:0000105 Biological treatment in which fish have been infected with a virus. ZECO FECO:0000111 chemical treatment FECO:0000104 "Experimental condition in which the fish is treated with a chemical substance. This treatment could be administered by adding the chemical substance to the tank water, injections, or by consumption." ZECO FECO:0000112 diet FECO:0000104 Experimental condition where the food of the zebrafish is manipulated in some way. ZECO FECO:0000113 food availability FECO:0000104 Experimental condition in which the availability of food is manipulated. ZECO FECO:0000114 fasting FECO:0000115 Limited food availability condition in which there is no food provided. ZECO FECO:0000115 limited food availability FECO:0000113 Food availability condition in which food is provided in limited supply. ZECO FECO:0000116 unlimited food availability FECO:0000247 Food availability condition in which food is available in unlimited supply. ZECO FECO:0000117 food content FECO:0000112 Diet condition in which the contents of the food is manipulated. ZECO FECO:0000118 cholesterol content FECO:0000117 Food content condition in which the amount of cholesterol in the diet is manipulated. ZECO FECO:0000119 high cholesterol FECO:0000118 Cholesterol content condition in which the amount of cholesterol in the diet is elevated. ZECO FECO:0000120 low cholesterol FECO:0000118 Cholesterol content condition in which the amount of cholesterol in the diet is reduced. ZECO FECO:0000121 fat content FECO:0000117 Food content condition in which the amount of fat in the diet is manipulated. ZECO FECO:0000122 high fat FECO:0000121|FECO:0000251 Fat content condition in which the amount of fat in the diet is elevated. ZECO FECO:0000123 high saturated fat FECO:0000122 High fat condition in which the amount of saturated fat in the diet is elevated. ZECO FECO:0000124 high monounsaturated fat FECO:0000122 High fat condition in which the amount of monounsaturated fat in the diet is elevated. ZECO FECO:0000125 low fat FECO:0000121|FECO:0000250 Fat content condition in which the amount of fat in the diet is reduced. ZECO FECO:0000126 low trans fat FECO:0000125 Low fat condition in which the amount of trans fat in the diet is reduced. ZECO FECO:0000127 low polyunsaturated fat FECO:0000125 Low fat condition in which the amount of polyunsaturated fat in the diet is reduced. ZECO FECO:0000128 protein content FECO:0000117 Food content condition in which the amount of protein in the diet is manipulated. ZECO FECO:0000129 high protein FECO:0000128|FECO:0000251 Protein content condition in which the protein in the diet is elevated. ZECO FECO:0000130 low protein FECO:0000128|FECO:0000250 Protein content condition in which the protein in the diet is reduced. ZECO FECO:0000131 stress FECO:0000104 ZECO FECO:0000132 high sugar FECO:0000241 High carbohydrate conditions in which the amount of sugar in the diet is elevated. ZECO FECO:0000133 high fructose FECO:0000132 High sugar condition in which the amount of fructose in the diet is elevated. ZECO FECO:0000134 high glucose FECO:0000132 High sugar condition in which the amount of glucose in the diet is elevated. ZECO FECO:0000135 high sucrose FECO:0000132 High sugar condition in which the amount of sucrose in the diet is elevated. ZECO FECO:0000136 low sugar FECO:0000242 High carbohydrate conditions in which the amount of sugar in the diet is reduced. ZECO FECO:0000137 low sucrose FECO:0000136 Low sugar condition in which the amount of sucrose in the diet is reduced. ZECO FECO:0000138 low fructose FECO:0000136 Low sugar condition in which the amount of fructose in the diet is reduced. ZECO FECO:0000139 low glucose FECO:0000136 Low sugar condition in which the amount of glucose in the diet is reduced. ZECO FECO:0000140 housing conditions FECO:0000322 Experimental condition that manipulates the enclosure of the fish. ZECO FECO:0000141 open roofed FECO:0000140 Housing condition in which the roof of the enclosure if open. ZECO FECO:0000142 overcrowding FECO:0000287 "Housing condition in which the enclosure of the fish is overcrowded, containing an excess of fish that reduces the available space of the enclosure." ZECO FECO:0000143 in vitro culture FECO:0000104 Experimental condition in which components of the fish have been removed and are maintained separately. ZECO FECO:0000144 organ culture FECO:0000143 In vitro culture condition in which an organ is dissected/isolated/collected from the fish and placed in culture. The analysis of the experiment is done on this organ in culture. ZECO FECO:0000145 primary cell culture FECO:0000143 In vitro culture condition in which an embryo or adult fish is dissociated to a single cell suspension. The analysis is made on this cell culture. ZECO FECO:0000146 lighting conditions FECO:0000104 "Experimental condition in which the intensity, wavelength, and/or duration of illumination is (are) different from the one in controlled conditions." ZECO FECO:0000147 light duration FECO:0000146 ZECO FECO:0000148 altered light dark cycle FECO:0000147 ZECO FECO:0000149 constant dark FECO:0000147 ZECO FECO:0000150 constant light FECO:0000147 ZECO FECO:0000151 light intensity FECO:0000146 ZECO FECO:0000152 high light intensity FECO:0000151 ZECO FECO:0000153 low light intensity FECO:0000151 ZECO FECO:0000154 gravity FECO:0000104 "Experimental condition in which gravity forces are manipulated. For zebrafish, this can be in the form of centrifugal forces or trips to outerspace." ZECO FECO:0000155 mechanical stress FECO:0000131 Experimental condition in which an external mechanical force is applied to the fish or part of the fish. ZECO FECO:0000156 vibration FECO:0000155 ZECO FECO:0000157 water flow FECO:0000155 ZECO FECO:0000158 circular flow FECO:0000157 ZECO FECO:0000159 through flow FECO:0000157 ZECO FECO:0000160 temperature exposure FECO:0000104 Experimental condition in which the zebrafish is exposed to an increased or decreased temperature. ZECO FECO:0000161 stable temperature exposure FECO:0000160 Temperature exposure condition in which fish are raised in temperature different (lower or higher) than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C. ZECO FECO:0000162 cold exposure FECO:0000161 Temperature exposure condition in which fish are raised in temperature that is lower than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C. ZECO FECO:0000163 heat exposure FECO:0000161 Temperature exposure condition in which fish are raised in temperature that is higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C. ZECO FECO:0000164 temperature shock FECO:0000160 Temperature exposure condition in which fish are subjected for a short period of time to temperature that is lower or higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C. ZECO FECO:0000165 cold shock FECO:0000164 Temperature shock condition in which fish are subjected for a short period of time to temperature lower than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C. ZECO FECO:0000166 heat shock FECO:0000164 Temperature shock condition in which fish are subjected for a short period of time to temperature higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C. ZECO FECO:0000168 ablation FECO:0000229 Targeted destruction of an anatomical structure. ZECO FECO:0000169 chemical ablation FECO:0000168 Experimental condition which uses a chemical to ablate an anatomical structure or cell. ZECO FECO:0000170 light ablation FECO:0000168|FECO:0000245 Experimental condition which uses focused light to ablate an anatomical structure or cell. ZECO FECO:0000171 resection FECO:0000176 "Surgical manipulation in which a particular organ, appendage, or part of an organism is removed." ZECO FECO:0000172 amputation FECO:0000171 Resection condtion in which all or part of an extremity such as the fin or tail are removed. ZECO FECO:0000173 vaccine treatment FECO:0000105 Biological treatment in which the organism is treated with a substance to stimulate the production of antibodies and provide immunity against one or several diseases. ZECO FECO:0000174 laceration FECO:0000229 Experimental condition in which there is a deep cut or tear of the flesh. ZECO FECO:0000176 surgical manipulation FECO:0000229 Experimental condition that involves manual or instrumental techniques to alter anatomical structures. ZECO FECO:0000177 xenotransplantation FECO:0000105 Experimental condition in which living cells or tissues from one species are transplanted into another. ZECO FECO:0000178 perforation FECO:0000229 Experimental condition in which a hole or break in the membranes of an organ or structure of the body is created. ZECO FECO:0000179 abrasion FECO:0000229 Experimental condition that results in superficial damage of tissue such that it is scraped or worn away. ZECO FECO:0000180 contusion FECO:0000229 "Experimental condition that results in hematoma of tissue in which capillaries and sometimes venules are damaged by trauma, allowing blood to seep, hemorrhage, or extravasate into the surrounding interstitial tissues. (https://en.wikipedia.org/wiki/Bruise)" ZECO FECO:0000181 transection FECO:0000176 Cutting transversly of an organ or tissue. Type of cutting often used to divide the spinal cord to investigate neural regeneration in zebrafish. ZECO FECO:0000182 water quality FECO:0000104 Experimental condition in which a chemical or physical characteristic of water is altered. ZECO FECO:0000183 gas composition FECO:0000182 Water quality condition that alters the concentration of atmospheric gases in water. ZECO FECO:0000184 carbon dioxide content FECO:0000183 A gas composition condition that alters the concentraion of carbion dioxide. ZECO FECO:0000185 hypercapnia FECO:0000184 ZECO FECO:0000186 hypocapnia FECO:0000184 ZECO FECO:0000187 oxygen content FECO:0000183 A gas composition condition that alters the concentraion of oxygen. ZECO FECO:0000188 hyperoxia FECO:0000187 An oxygen content with high concentration of oxygen. ZECO FECO:0000189 hypoxia FECO:0000187 An oxygen content with low concentration of oxygen. ZECO FECO:0000190 ion composition FECO:0000182 ZECO FECO:0000191 modified calcium composition FECO:0000190 ZECO FECO:0000192 high calcium FECO:0000191 ZECO FECO:0000193 low calcium FECO:0000191 ZECO FECO:0000194 modified potassium composition FECO:0000190 ZECO FECO:0000195 high potassium FECO:0000194 ZECO FECO:0000196 low potassium FECO:0000194 ZECO FECO:0000197 modified sodium composition FECO:0000190 ZECO FECO:0000198 high sodium FECO:0000197 ZECO FECO:0000199 low sodium FECO:0000197 ZECO FECO:0000200 pH FECO:0000190 ZECO FECO:0000201 acidic FECO:0000200 Experimental condition in which the pH of the water is lower than the pH of the controlled conditions. ZECO FECO:0000202 basic FECO:0000200 Experimental condition in which the pH of the water is higher than the pH of the controlled conditions. ZECO FECO:0000203 water salinity FECO:0000182 ZECO FECO:0000204 hypertonic FECO:0000203 Experimental condition in which the salt concentration is higher than the one in controlled conditions. ZECO FECO:0000205 hypotonic FECO:0000203 Experimental condition in which the salt concentration is lower than the one in controlled conditions. ZECO FECO:0000206 isotonic FECO:0000203 ZECO FECO:0000207 stable FECO:0000203 ZECO FECO:0000208 radiation FECO:0000104 ZECO FECO:0000209 electromagnetic radiation FECO:0000208 ZECO FECO:0000210 radio waves FECO:0000209 ZECO FECO:0000211 microwaves FECO:0000209 ZECO FECO:0000212 infared FECO:0000209 ZECO FECO:0000213 visible light FECO:0000209 Electromagnetic radiation with a wavelength from 400 nm to 700 nm. Visible light referes to the light which is visible to the human eye and is responsible fo the sense of sight. ZECO FECO:0000214 ultraviolet light FECO:0000209 Electromagnetic radiation with a wavelength from 10 nm to 400nm. Long-wavelength ultraviolet radiation can cause chemical reactions and causes many substances to glow or fluoresce. ZECO FECO:0000215 x-ray FECO:0000209 ZECO FECO:0000216 gamma ray FECO:0000209 ZECO FECO:0000217 particle radiation FECO:0000208 ZECO FECO:0000218 proton FECO:0000217 ZECO FECO:0000219 neutron FECO:0000217 ZECO FECO:0000220 acoustic radiation FECO:0000208 ZECO FECO:0000221 alpha particle FECO:0000217 ZECO FECO:0000222 electromagnetic field FECO:0000104 Experimental condition in which the fish is exposed to a physical field that is produced by electrically charged objects. ZECO FECO:0000223 electric field FECO:0000222 Experimental condition where the fish is exposed to materials that produce an electric field. ZECO FECO:0000224 magnetic field FECO:0000222 Experimental condition where the fish is exposed to magnetic materials. ZECO FECO:0000225 high polysunsaturated fat FECO:0000122 High fat condition in which the amount of polyunsaturated fat in the diet is elevated. ZECO FECO:0000226 high trans fat FECO:0000122 High fat condition in which the amount of trans fat in the diet is elevated. ZECO FECO:0000227 low saturated fat FECO:0000125 Low fat condition in which the amount of saturated fat in the diet is reduced. ZECO FECO:0000228 low monounsaturated fat FECO:0000125 Low fat condition in which the amount of monounsaturated fat in the diet is reduced. ZECO FECO:0000229 physical alteration FECO:0000104 "Experimental condition in which an anatomical structure, cell, or organ has sustained targeted physical change, usually through the use of an instrument." ZECO FECO:0000230 bacterial treatment by injection FECO:0000106 Bacterial treatment where the bacteria are injected into the fish. ZECO FECO:0000231 bacterial treatment by exposure to environment FECO:0000106 Bacterial treatment where the bacteria are introduced via the environment. For zebrafish this is the tank water. ZECO FECO:0000232 fungal treatment by injection FECO:0000107 Fungal treatment where the fungus is injected into the fish. ZECO FECO:0000233 fungal treatment by exposure to environment FECO:0000107 Fungal treatment where the fungus is introduced via the environment. For zebrafish this is the tank water. ZECO FECO:0000234 viral treatment by exposure to environment FECO:0000110 Viral treatment where the virus is introduced via the environment. For zebrafish this is the tank water. ZECO FECO:0000235 viral treatment by injection FECO:0000110 Viral treatment where the virus is injected into the fish. ZECO FECO:0000236 cancer xenotransplantation FECO:0000177 Xenotransplantation condition in which cancer cells are injected or grafted into the zebrafish. ZECO FECO:0000237 chemical treatment by injection FECO:0000111 Chemical treatment in which the chemical is injected into the zebrafish. ZECO FECO:0000238 chemical treatment by environment FECO:0000111 Chemical treatment condition in which the chemical is introduced through the environment. For zebrafish this is the tank water. ZECO FECO:0000239 chemical treatment by diet FECO:0000111|FECO:0000112 Chemical treatment condition in which the chemical is introduced through the diet. ZECO FECO:0000240 carbohydrate content FECO:0000117 Food content condition in which the amount of carbohydrate in the diet is manipulated. ZECO FECO:0000241 high carbohydrate FECO:0000251|FECO:0000240 Food content condtion in which the amount of carbohydrate in the diet is elevated. ZECO FECO:0000242 low carbohydrate FECO:0000250|FECO:0000240 Food content condtion in which the amount of carbohydrate in the diet is reduced. ZECO FECO:0000243 stress by handling FECO:0000131 ZECO FECO:0000244 ultrasound FECO:0000156 Mechanical stress condition where the organism is subjected to vibrations having an ultrasonic frequency. ZECO FECO:0000245 light damage FECO:0000229 "Physical alteration which uses light to damage the anatomical structure, cell, or organ." ZECO FECO:0000246 undercrowding FECO:0000287 "Housing condition in which the enclosure of the fish is undercrowded,containing a low amount of fish that increases the available space of the enclosure." ZECO FECO:0000247 increased food availability FECO:0000113 Food availability condition in which food is provided in increased supply. ZECO FECO:0000248 cold damage FECO:0000229 "Physical alteration which uses cold to damage an anatomical structure, cell, or organ" ZECO FECO:0000249 cryoablation FECO:0000168|FECO:0000248 Experimental condition which uses a cold instrument to ablate an anatomical structure or cell. ZECO FECO:0000250 nutrient decreased FECO:0000117 Food content condition in which levels of a nutrient are decreased relative to standard diet. ZECO FECO:0000251 nutrient increased FECO:0000117 Food content condition in which levels of a nutrient are increased relative to standard diet. ZECO FECO:0000252 feeding regime FECO:0000104 Experimental condition that manipulates the frequency or way an organism is fed. ZECO FECO:0000253 gavage FECO:0000252 "Feeding regime in which food, drugs, or other substances are administered by force, typically through a tube leading down the throat to the stomach." ZECO FECO:0000254 bacterial treatment by gavage FECO:0000106|FECO:0000253 Bacterial treatment condition where bacteria are introduced to the organism by gavage. ZECO FECO:0000255 chemical treatment by gavage FECO:0000111|FECO:0000253 Chemical treatment condition where the chemical is introduced to the organism by gavage. ZECO FECO:0000256 bacterial treatment by diet FECO:0000106 Bacterial treatment where bacteria are introduced via the diet. ZECO FECO:0000259 cauterization FECO:0000229 "Condition that uses a cold or hot insturment, electrical current, or chemical to burn or dissolve an anatomical structure to remove or close it off." ZECO FECO:0000260 thermal cauterization FECO:0000259 Cauterization of a tissue using a heated instrument. ZECO FECO:0000261 compression injury FECO:0000229 An injury that occurs because of pressure from a heavy object onto a body part. A compression injury may also arise from squeezing of a body part between two objects. https://www.medicinenet.com/crush_injury/definition.htm ZECO FECO:0000262 probiotic content FECO:0000117 Food content condition in which the amount of probiotics in the diet is manipulated ZECO FECO:0000263 microgravity FECO:0000154 Experimental condition in which gravity forces are smaller than in control conditions. An example of a microgravity condition would be trips to outerspace. ZECO FECO:0000264 increased gravity FECO:0000154 Experimental condition in which gravity forces are greater than in control conditions. An example of an increased gravity condition would be the application of centrifugal forces. ZECO FECO:0000265 baseline FECO:0000100 FECO FECO:0000266 sampling site FECO:0000265 "A site from which a sample, i.e. a statistically representative of the whole, is extracted from the whole. e.g. a liver sample" EFO: sampling site FECO:0000267 development stage FECO:0000265 "A developmental stage is spatiotemporal region encompassing some part of the life cycle of an organism, e.g. blastula stage" EFO: development stage FECO:0000268 biological attributes FECO:0000104 "An experimental factor which is a property or characteristic of some other entity. For example, the mouse has the colour white." EFO: material property FECO:0000269 strain FECO:0000268 FECO FECO:0000270 sex FECO:0000268 FECO FECO:0000271 phenotype FECO:0000268 FECO FECO:0000272 multi-sex genotype FECO:0000270 FECO FECO:0000273 micromineral decreased FECO:0000250 FECO FECO:0000274 protein sources FECO:0000128 FECO FECO:0000275 body color FECO:0000271 FECO FECO:0000278 generation FECO:0000268 EFO: generation FECO:0000279 reused water FECO:0000182 FECO FECO:0000280 behaviour FECO:0000268 FO: Behaviour;OBA: behavioral phenotype FECO:0000281 growth FECO:0000271 any measurable or observable characteristic related to the change in size of an animal ATOL: growth trait FECO:0000283 food habit transition FECO:0000112 FECO FECO:0000284 fat sources FECO:0000121 FECO FECO:0000285 starch sources FECO:0000117 FECO FECO:0000287 stocking density FECO:0000140 FECO FECO:0000289 gene FECO:0000104 "A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions." EFO: gene FECO:0000290 gene mutation FECO:0000289 FECO FECO:0000294 gene knockdown FECO:0000289 FECO FECO:0000295 gene overexpression FECO:0000289 FECO FECO:0000296 regeneration FECO:0000268 FECO FECO:0000297 disease FECO:0000268 A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism. EFO: disease FECO:0000298 cancer FECO:0000297 "Any disorder that features disrupted cell proliferation. Includes hyperplasia, neoplastic syndrome and isolated neoplasm diseases as well as precancerous conditions." EFO: cancer or benign tumor FECO:0000299 liver cancer FECO:0000298 FECO FECO:0000301 gene product FECO:0000289 FECO FECO:0000302 transgenic FECO:0000289 FECO FECO:0000303 homozygous/heterozygous FECO:0000289 FECO FECO:0000305 life FECO:0000267 FECO FECO:0000306 refeeding FECO:0000115 FECO FECO:0000307 rhythmic behavior FECO:0000280 OBA: rhythmic behavior phenotype FECO:0000308 shear stress FECO:0000131 FECO FECO:0000309 migratory FECO:0000280 FECO FECO:0000310 stream FECO:0000323 FO: Stream FECO:0000311 resistance FECO:0000269 FECO FECO:0000312 swimming ability FECO:0000317 FECO FECO:0000313 ploidy FECO:0000268 "The number of single sets of chromosomes in the cell or an organism e.g., haploid, diploid, triploid, etc. A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism." EFO: ploidy FECO:0000314 euploid FECO:0000313 "A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes." EFO: euploid FECO:0000315 polyploid FECO:0000314 A ploidy quality inhering in a bearer by virtue of the bearer's containing more than two homologous sets of chromosomes. EFO: polyploid FECO:0000316 haploid FECO:0000314 FECO FECO:0000318 reproductive behavior FECO:0000280 OBA: reproductive behavior phenotype FECO:0000317 kinesthetic behavior FECO:0000280 OBA: kinesthetic behavior phenotype FECO:0000320 hybridization FECO:0000269 FECO FECO:0000319 susceptibleness FECO:0000269 EFO: disease susceptibility FECO:0000321 ecosystem FECO:0000269|FECO:0000104 FECO FECO:0000323 wild habitat FECO:0000321 A habitat is the actual location in the environment where an organism lives and consists of all the physical and biological resources available to a species. The collection of all the habitat areas of a species constitutes its geographic range. FO: Habitat FECO:0000322 artificial intervention in ecology FECO:0000321 FECO FECO:0000325 growth performance FECO:0000281 ATOL FECO:0000324 body size FECO:0000281 any measurable or observable characteristic related to the physical dimensions of an organism ATOL: body size trait FECO:0000326 biological stress FECO:0000131 FECO FECO:0000327 prey FECO:0000326 FECO