39659012 + 0 in total (QC-passed reads + QC-failed reads) 2707090 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 38017506 + 0 mapped (95.86% : N/A) 36951922 + 0 paired in sequencing 18475961 + 0 read1 18475961 + 0 read2 34344324 + 0 properly paired (92.94% : N/A) 34781942 + 0 with itself and mate mapped 528474 + 0 singletons (1.43% : N/A) 299628 + 0 with mate mapped to a different chr 288115 + 0 with mate mapped to a different chr (mapQ>=5)