#!/usr/bin/env bash

resdir="../../../data/predictions/random5k"
codingdir="../../../data/codingf/random5k"
fadir1="../../../data/testing_data/1.Golden_data"
fadir2="../../../data/testing_data/2.Mitrans"
data2coding()
{
    sub=$1
    act=$2
    faa=$3
    mkdir -p codingf/random5k/${sub}
    ./res2coding.sh ${resdir}/${sub}/predres/ ${codingdir}/${sub} ${act} ${faa}
}

data2coding gencode_human 1 ${fadir1}/gencode_human_5000.fa
data2coding gencode_mouse 1 ${fadir1}/gencode_mouse_5000.fa
data2coding refseq_human 0 ${fadir1}/refseq_human_5000.fa
data2coding refseq_mouse 0 ${fadir1}/refseq_mouse_5000.fa
data2coding mitrans_coding 0 ${fadir2}/mitrans_coding_5000.fa
data2coding mitrans_lncRNA 1 ${fadir2}/mitrans_lncRNA_5000.fa

./mk_pair.sh ${codingdir}/gencode_human ${codingdir}/refseq_human ${codingdir}/pair_human
./mk_pair.sh ${codingdir}/gencode_mouse ${codingdir}/refseq_mouse ${codingdir}/pair_mouse
./mk_pair.sh ${codingdir}/mitrans_coding ${codingdir}/mitrans_lncRNA ${codingdir}/pair_mitrans