# make sub-species directories
mkdirs0()
{
mkdir CNCI_pl CNCI_ve come1 come2 cpat_fly cpat_human cpat_mouse cpat_zebrafish cpc2 cpc feelnc_ab_cl feelnc_ab_sf feelnc_all_cl feelnc_all_sf feelnc_ff_cl feelnc_ff_sf feelnc_hm_cl feelnc_hm_sf feelnc_ms_cl feelnc_ms_sf feelnc_wm_cl feelnc_wm_sf feelnc_zf_cl feelnc_zf_sf hmmscan1 hmmscan2 hmmscan3 iSeeRNA lncRScan lncScore longdist_GRCh37_GRCm38 longdist_GRCh37 longdist_GRCh38_GRCm38 longdist_GRCh38 longdist_GRCm38_GRCz10 longdist_GRCm38 PLEK plncpro1 plncpro2 rnaplonc1 rnaplonc2
for i in *
    do
        cd $i
        mkdir sim30 sim100 sim300 sim600 sim1200
        cd ../
    done
}

# make one specie directories
mkdirs1()
{
mkdir $1
cd $1
mkdirs0
cd ..
}

# make human-mouse directories
mkdir2()
{
mkdir $1
cd $1
mkdirs1 "human"
mkdirs1 "mouse"
}


script_dir=$(dirname $(realpath $0))

# Convert prediction result to coding file
mkdir2 "../../../data/codingf/simu"
cd ${script_dir}
./tmap2coding.sh > t2code.sh
sh t2code.sh