#!/usr/bin/env sh

data2coding()
{
    sub=$1
    faa=$2
    outdir="../../../data/codingf/smallRNE/simple/${sub}"
    mkdir -p ${outdir}
    ./res2coding_fa.sh ../../../data/predictions/smallRNE/simple/${sub}/predres/ ${outdir} guess ${faa}
}

data2coding part0 ../../../data/testing_data/5.Different_specie/split_simple/simple0.fasta
data2coding part1 ../../../data/testing_data/5.Different_specie/split_simple/simple1.fasta
data2coding part2 ../../../data/testing_data/5.Different_specie/split_simple/simple2.fasta
data2coding part3 ../../../data/testing_data/5.Different_specie/split_simple/simple3.fasta
data2coding part4 ../../../data/testing_data/5.Different_specie/split_simple/simple4.fasta
data2coding part5 ../../../data/testing_data/5.Different_specie/split_simple/simple5.fasta
data2coding part6 ../../../data/testing_data/5.Different_specie/split_simple/simple6.fasta
data2coding part7 ../../../data/testing_data/5.Different_specie/split_simple/simple7.fasta
data2coding part8 ../../../data/testing_data/5.Different_specie/split_simple/simple8.fasta
data2coding part9 ../../../data/testing_data/5.Different_specie/split_simple/simple9.fasta

mkdir -p ../../../data/codingf/smallRNE/all_spe
./res2coding_fa.sh ../../../data/predictions/smallRNE/all_spe/predres ../../../data/codingf/smallRNE/all_spe guess ../../../data/testing_data/5.Different_species/all_spe.fasta
./merge_smallRNE_simple.sh