mkdir prediction_results/random5k

golden_in="../../data/testing_data/1.Golden_data"
mitrans_in="../../data/testing_data/2.Mitrans"
out="../../data/predictions/random5k"

# human gtf
./predict_gtf.sh ${golden_in}/gencode_human_5000.fa ${golden_in}/gencode_human_5000.gtf human ${out}/gencode_human
./predict_gtf.sh ${golden_in}/refseq_human_5000.fa ${golden_in}/refseq_human_5000.gtf human ${out}/refseq_human
# human fa
./predict_fa.sh ${golden_in}/gencode_human_5000.fa ${out}/gencode_human
./predict_fa.sh ${golden_in}/refseq_human_5000.fa ${out}/refseq_human

# mouse gtf
./predict_gtf.sh ${golden_in}/gencode_mouse_5000.fa ${golden_in}/gencode_mouse_5000.gtf mouse ${out}/gencode_mouse
./predict_gtf.sh ${golden_in}/refseq_mouse_5000.fa ${golden_in}/refseq_mouse_5000.gtf mouse ${out}/refseq_mouse
# mouse fa
./predict_fa.sh ${golden_in}/gencode_mouse_5000.fa ${out}/gencode_mouse
./predict_fa.sh ${golden_in}/refseq_mouse_5000.fa ${out}/refseq_mouse

# mitrans gtf
./predict_gtf_hg19.sh ${mitrans_in}/mitrans_coding_5000.fa ${mitrans_in}/mitrans_coding_5000.gtf coding ${out}/mitrans_coding
./predict_gtf_hg19.sh ${mitrans_in}/mitrans_lncRNA_5000.fa ${mitrans_in}/mitrans_lncRNA_5000.gtf lncRNA ${out}/mitrans_lncRNA
# mitrnas fa
./predict_fa.sh ${mitrans_in}/mitrans_coding_5000.fa ${out}/mitrans_coding
./predict_fa.sh ${mitrans_in}/mitrans_lncRNA_5000.fa ${out}/mitrans_lncRNA