#!/usr/bin/env bash


#./predict_fa.sh merged.fasta result
#./predict_gtf.sh merged.fasta merged.gtf mouse result

input_dir="../../data/testing_data/3.Erroneous_tx"
human_input="${input_dir}/human"
mouse_input="${input_dir}/mouse"
out_dir="../../data/predictions/simu"
human_out="${out_dir}/human"
mouse_out="${out_dir}/mouse"

x=(30 100 300 600 1200)
# human
for i in ${x[@]}
do
    ./predict_fa.sh ${human_input}/sim${i}/merged.fasta ${human_out}/sim${i}
    ./predict_gtf.sh ${human_input}/sim${i}/merged.fasta ${human_input}/sim${i}/merged.gtf human ${human_out}/sim${i}
done
# mouse
for i in ${x[@]}
do
    ./predict_fa.sh ${mouse_input}/sim${i}/merged.fasta ${mouse_out}/sim${i}
    ./predict_gtf.sh ${mouse_input}/sim${i}/merged.fasta ${mouse_input}/sim${i}/merged.gtf mouse ${mouse_out}/sim${i}
done