#!/usr/bin/env sh
source_dir="../../../data/source_data"
out_dir="../../../data/processing_data/Different_species"
source_dir="../../../data/source_data/RefSeq"
./data_prepare.py ${source_dir}/EnsemblPlants/*.fa --source ensembl > ${out_dir}/RefNoncEsb_all.fa
./data_prepare.py ${source_dir}/Ensembl/*.fa --source ensembl >> ${out_dir}/RefNoncEsb_all.fa
./data_prepare.py ${source_dir}/NONCODE/*.fa --source noncode >> ${out_dir}/RefNoncEsb_all.fa
gzip -dc ${source_dir}/RefSeq/*.gz | ./data_prepare.py - --source refSeq >> ${out_dir}/RefNoncEsb_all.fa
../7.Misc/illegal_filter.py ${out_dir}/RefNoncEsb_all.fa > ${out_dir}/RefNoncEsb_all_filtered.fa