XLOC_001002


Basic Information

Item Value
gene id XLOC_001002
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8612575 ~ 8625266 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002917
AAACGTAAATATCTCATTGTTCTTGCAGATACACTGATAAATCATCATCTCCTCGTCTTCATCATGAGTCTTCTTCTTCATCTACTGATGCTGTCGCTTCTCTCTGCTGGATCAGCTAAAGTTGTGGATGATTTTGAGAAGAGCTGTGGTCAATTTTTTGCTAATGGAAAATCTCCAACAAAATTTACTGGAGATCACTACAAGCAGATCTGCCAAACTCTAGATAATGCTGTTCATTTCGCCACACTTTATGACACTTACAACAAGATCCCTGTGTACTCGGCCTATGTGTTTGAAGGGCTAATGGGCTGCACAAGACTAAACAGCTGGTACATTGAACCTCAGcttgatgatgataataatgcagAAGAAAACATGGAATTTGAAACATTTGTGGATATAGGGGAACTTGGAGAAAATCAAGCTCTCAATAAAGACTATTATAGATCTGGCTTTGACAGAGGTCATCTGGCTCCAGTTTACCATGCAAACTCTCAGGAGTGTGCAGACGCCACCTTCACTCCCACCAATGCTGCTCCACAAAACCACTCTTTCAACCGAGTTGAATGGAGGTAACTAGAAAAAAGAATTGCAAATGATCTGAGCATAACCTGTGCAGAATACAATGTTCACATTGTGACAGGGGTGGTACCAGGTAATAACCAAACAATCAACAACAGAGTGAATGTGCCTAGTCATTTCTGGACTGCATACTGTTGCTTAGACCAAAATAATAGGTCTGCACACTCTGGGGGAGCCATTGGAATCAATGACAATAATGGATATATTACTCCAATAATGACTGTGGCTGAGTTAGAGACAGATTTGGAGCAGTTGTATGGAACAGCCTTTACATTGTTTCAGAATGGGCCAATAATAAGGCAGTTCTTTGCTTATATGAGTGATTAAACTGTAAACATTTCATGAAATCTTTAAGTAGGATTTCATGAAGCTCATCATATTTTCTAATATTACTGTACTGTAATTAAACTGATAAAACCTTACATTTTTTAACACTTGTAATGTTGCAGTTCTTGAGTTCATGAGTTTTATGGCTGATTAAGAAACAGATCTGGGAAAACAGTAAACCAgcatttaattgtttatgttttatcatCATTTTGTTTAAAGACTGGAAATATTTTTAGGGTGATGTTATGTTGTATTTCATAATCAATGGCAATGATAATTATGTGACAATGATAATGAATGTGCTGATGATCTCAACTGTAGAACTATTAACCTCTAATAAAAAATCATTTATGCTCC
>TCONS_00001589
AAATACTCGTCTGTCTCACTGAATCACCAGTGTTTTCTTGACTTCAGCATTGGTGTGTACTGCTGTATTTGTAGAGCTGCCTTTAACAGAGTTATAGTTGATTCTTTATTGTTTATTGAGTGTTTTATagtttattaatgtgttttgtaTCATGTTAAAGCATTCTTTCATGTTTTTCATTGATAACAGCTCAACCTTTACTCTCCACTGCGATAGATCTTAGGTAGGTGTTCATTTCTGTTTACTTTGTAAACTATtcaagtttttacaaaaaaaaatcttgttgcaGATATACTGATAAATCAACACCTCCTCATCTCCATTATGAATCTTCTTCTTCATCTGCTGATGCTGTCGCTTCTCTCTGCTGGATCAGCCAGAGTTGTGCAGGATTTTGAGAAGAGCTGTGGTCAATTTTTTGCAAAAGGAAAATCTCCAAAAGGATTTACTGGAGCGCAGTACAGGCAGATCTGCCAAACTCTAGATAATGCTGTTCATTTCGCCACACTTTATGACACTTACAACAAGATCCCTGTGTACTCGGCCTATGTGTTTGAAGGGCTAATGGGCTGCACAAGACTAAACAGCTGGTACATTGAACCTCAGCTTGATGATAATAATGGAGGAGCAAACATGGCATTTTCGAGCACCGTGAAAGAAAATTATCGAGGAGTTCATCAAGCTCTCGATAAAGACTATGATAAATCTGGCTATGACAGAGGTCATCTGGCTCCAGTTTACCATGCAAACTCTCAGAGCTGTGCTGACGCCACCTTCACTCTCACCAATGCTGCTCCACAAGAGCCCAATTTTAACCGAGGTACATGGAAGGCACTAGAGGGACAAATTGCCAATGATCTGTTCAAGACATGCACAAAAAAAGGCTGTCGTGTTTATGTTGTGACAGGGGTGGTACCAGGTAATGGACAACCAGTGAATAACAGAGTGAATGTACCTAGTTATTTCTGGACCGCTTTCTGCTGCTTAAACAAGAATGTGTGTCAGTTCTCTGAGGGAGCCATTGGAACCAATGACAATAATGGCAATATTATGCCATTGAGTGTGGCTGGTTTACAGAATAAGTTACAACAGTTTTATGGAAAGGCTATTACATTGTTTCAGTAGGCTAACGATAACAAAACCAGACACCGTTTGTTTCTAATAAATCCTCACTGAGTGATTAAACATGGCAAACCTATGTGAAATTGTGTCTTTTAATGCAGATTAGTACAATTTGATCAAAACTGTAATCACTATAATTGAATTATAGAACATTTAAGCTGTTTTATTTAAAAGGGATGCAAATGTATCTGTAATGAAGTGTATCATGTACTTAATCAAGAATGATGATGATTACCCTGTGAtattataatgaaaacaatacTGATTTTACTGTAAAATCTTTTAAGCTCTAATAAAGATCTTTATTGAGGCAAAACCTGC
>TCONS_00001590
GTTGGATCAAGTTTGTGTCCTGCTTGAAGTACATTTCCTTGAATGTGTTAATGATACACTGATAAATCATCATCTCCTCGTCTTCATCATGAGTCTTCTTCTTCATCTACTGATGCTGTCGCTTCTCTCTGCTGGATCAGCTAAAGTTGTGGATGATTTTGAGAAGAGCTGTGGTCAATTTTTTGCTAATGGAAAATCTCCAACAAAATTTACTGGAGATCACTACAAGCAGATCTGCCAAACTCTAGATAATGCTGTTTATTTTGCCACACTTtatgacactcacaacagaatCCCTGTGTACTCGGCCTACAAGTTTGAAGGGCTAATGGGCTGCACAAGACTAGACAAGTGGTACATTGAACCTCAAATATACTGATAAATCAACACCTCCTCATCTCCATTATGAATCTTCTTCTTCATCTGCTGATGCTGTCGCTTCTCTCTGCTGGATCAGCCAGAGTTGTGCAGGATTTTGAGAAGAGCTGTGGTCAATTTTTTGCAAAAGGAAAATCTCCAAAAGGATTTACTGGAGCGCAGTACAGGCAGATCTGCCAAACTCTAGATAATGCTGTTCATTTCGCCACACTTTATGACACTTACAACAAGATCCCTGTGTACTCGGCCTATGTGTTTGAAGGGCTAATGGGCTGCACAAGACTAAACAGCTGGTACATTGAACCTCAGCTTGATGATAATAATGGAGGAGCAAACATGGCATTTTCGAGCACCGTGAAAGAAAATTATCGAGGAGTTCATCAAGCTCTCGATAAAGACTATGATAAATCTGGCTATGACAGAGGTCATCTGGCTCCAGTTTACCATGCAAACTCTCAGAGCTGTGCTGACGCCACCTTCACTCTCACCAATGCTGCTCCACAAGAGCCCAATTTTAACCGAGGTACATGGAAGGCACTAGAGGGACAAATTGCCAATGATCTGTTCAAGACATGCACAAAAAAAGGCTGTCGTGTTTATGTTGTGACAGGGGTGGTACCAGGTAATGGACAACCAGTGAATAACAGAGTGAATGTACCTAGTTATTTCTGGACCGCTTTCTGCTGCTTAAACAAGAATGTGTGTCAGTTCTCTGAGGGAGCCATTGGAACCAATGACAATAATGGCAATATTATGCCATTGAGTGTGGCTGGTTTACAGAATAAGTTACAACAGTTTTATGGAAAGGCTATTACATTGTTTCAGTAG
>TCONS_00003335
ATCATGAGTCTTCTTCTTCATCTACTGATGCTGTCGCTTCTCTCTGCTGGATCAGCTAAAGTTGTGGATGATTTTGAGAAGAGCTGTGGTCAATTTTTTGCTAATGGAAAATCTCCAACAAAATTTACTGGAGATCACTACAAGCAGATCTGCCAAACTCTAGATAATGCTGTTTATTTTGCCACACTTtatgacactcacaacagaatCCCTGTGTACTCGGCCTACAAGTTTGAAGGGCTAATGGGCTGCACAAGACTAGACAAGTGGTACATTGAACCTCAAGTAAGTAAAATATCACGCAAACTGGCTTGTGAAAGCCAATATACACTTGCATCATCAAACATGGAATTGAAGAAAAATTTAGGAGTTCTTCAAGCTCTCAATAAAGACTATTATAAATCTGGCTACGACAGAGGTCATCTGGCTCCAGTTTATCATGCAAACTCTCAGGGCTGTGCTGACGCCACCTTCACTCTAACAAATGCTGCTCCACAAAACCCCTCTTTTAACGGAGGTGAATGGAGGGATCTAGAAAAAGATATTGCGAAACGTTTGGATAGTGAATGCAAGAACCTTACTGCTTACATAGTGACAGGGGTGgttccaaacagagtGGCTGTGCCTAGTCATTTCTGGACTGCGTTCCACTGCTTAGACAACAACATGAAAAGTAAAATCGCAAGAGGGTTTATTGGAAGAAATAAGAACAATCCTCCCAGAAGCATTACTGTGAAAAAATTAGAGACAGAGTTGAAAAAACATTATAATGTTAAAGATTTTAAGTTGTTTGACTTGTCTTCAAAGAAGAGG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005615 extracellular space cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0008131 primary amine oxidase activity molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0046906 tetrapyrrole binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000079332

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002917 False 1269 lncRNA 0.37 3 8612575 8624942
TCONS_00001589 False 1443 lncRNA 0.38 2 8615535 8618644
TCONS_00001590 False 1206 lncRNA 0.42 4 8615853 8625266
TCONS_00003335 True 813 lncRNA 0.40 4 8622702 8624882

Neighbor

gene id symbol gene type direction distance location
XLOC_001001 NA coding downstream 25216 8579155 ~ 8587359 (-)
XLOC_001000 ptcd1 coding downstream 46008 8555323 ~ 8566567 (-)
XLOC_000999 zgc:112980 coding downstream 59277 8539671 ~ 8553298 (-)
XLOC_000998 NA coding downstream 102509 8504977 ~ 8510066 (-)
XLOC_000997 syngr3b coding downstream 183814 8415983 ~ 8428761 (-)
XLOC_001003 fbxl18 coding upstream 12896 8638162 ~ 8646941 (-)
XLOC_001004 actb1 coding upstream 23833 8649099 ~ 8653385 (-)
XLOC_001005 abcg2b coding upstream 47795 8673061 ~ 8691969 (-)
XLOC_001006 grin2ab coding upstream 138163 8763429 ~ 8928841 (-)
XLOC_001007 socs1b coding upstream 337358 8962624 ~ 8966046 (-)
XLOC_000996 NA non-coding downstream 407347 8202390 ~ 8205228 (-)
XLOC_000985 CR855320.6 non-coding downstream 692369 7920119 ~ 7920206 (-)
XLOC_000981 BX908756.3 non-coding downstream 768213 7771557 ~ 7844362 (-)
XLOC_001008 NA non-coding upstream 349234 8974500 ~ 8977963 (-)
XLOC_001009 NA non-coding upstream 353639 8978905 ~ 8980671 (-)
XLOC_001010 NA non-coding upstream 456576 9081842 ~ 9082772 (-)
XLOC_001015 NA non-coding upstream 513372 9138638 ~ 9139160 (-)
XLOC_001016 BX004779.2 non-coding upstream 532044 9157310 ~ 9162637 (-)

Expression


Co-expression Network