XLOC_001004 (actb1)


Basic Information

Item Value
gene id XLOC_001004
gene name actb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8649099 ~ 8653385 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001592
CCGCTCGCTGCCGAAAGTTTACCTTATATGGAAGGAGCCGGCCGCAGTGCCGGCTATAAAGCTGTGACCCACCTCACGCTCAGCATTGTGAGTTTTCAGTGCACGCTGAGAAGATCTTCACTCCCCTTGTTCACAATAACCTACTAATACACAGCCATGGATGAGGAAATCGCTGCCCTGGTCGTTGACAACGGCTCCGGTATGTGCAAAGCCGGTTTTGCTGGAGATGATGCCCCTCGTGCTGTTTTCCCCTCCATTGTTGGACGACCCAGACATCAGGGAGTGATGGTTGGCATGGGACAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAATACCCCATTGAGCACGGTATTGTGACTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTCTCTCTGTACGCTTCTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTGACCCACACCGTGCCCATCTATGAGGGTTACGCTCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGTGACCTGACAGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAAAGAGAAATTGTCCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGCAGGAGATGGGAACCGCTGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATTGGCAATGAGCGTTTCCGTTGCCCCGAGGCTCTCTTCCAGCCTTCCTTCCTGGGTATGGAATCTTGCGGTATCCATGAGACCACCTTCAACTCCATCATGAAGTGCGACGTGGACATCCGTAAGGACCTGTATGCCAACACAGTGCTGTCTGGAGGTACCACCATGTACCCTGGCATTGCTGACCGTATGCAGAAGGAGATCACCTCTCTTGCTCCTTCCACCATGAAGATCAAGATCATTGCTCCCCCTGAGCGTAAATACTCCGTCTGGATCGGTGGCTCCATCTTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGATGAGTCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAAACAGAACTGTTGCCACCTTAAAATGGCCATGCAATGAGATTCAAACGAACGACCAACCTAAACCTCTCGAACAAGATGACATCAGCATGGCTTCTGCTCTGTATGGCGCATTGACTCAGGATGCGGAAACTGGAAAGGGAGGTAGTTGTCTAACAGGGGGAGGAGCTTTCCCCGAGAGGACTTCAATGTACATTTCTTTTAGTCATTCCAGAAGCGTTTACCACTTTGCCCTCCTCACAATGGGCGTCCATGACCTTTTTGTTATAGTGTTTATGTAAATTATGTACTCGatacattgtttttctttttgtactTCAGCCTTAAACTTGGCCCAGTTTGTTATTGTTGCAATGAGGGGAAAGCTTTACCTTTTAAAAAGTGAAGATCTTGCAGGACTTCCCTAGGGTATGTGAATAAGGGATGTCCCTTGAAAATGTAAGCCAGGGTGTCTCTGTACACTGACAAGTCAACCCAAATAAAACGTGCACATGTAAAACCACACAA
>TCONS_00001593
CGCCTTTGCGCCGCCTACTGGCCAGACGTCACAAATCCATCAGTCATCACCGCCTATAAAAGACACTACCCATTCATATTTTAACAGTTTCGCTTTTTTTCCCTACAGCCATGGATGAGGAAATCGCTGCCCTGGTCGTTGACAACGGCTCCGGTATGTGCAAAGCCGGTTTTGCTGGAGATGATGCCCCTCGTGCTGTTTTCCCCTCCATTGTTGGACGACCCAGACATCAGGGAGTGATGGTTGGCATGGGACAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAATACCCCATTGAGCACGGTATTGTGACTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTCTCTCTGTACGCTTCTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTGACCCACACCGTGCCCATCTATGAGGGTTACGCTCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGTGACCTGACAGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAAAGAGAAATTGTCCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGCAGGAGATGGGAACCGCTGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATTGGCAATGAGCGTTTCCGTTGCCCCGAGGCTCTCTTCCAGCCTTCCTTCCTGGGTATGGAATCTTGCGGTATCCATGAGACCACCTTCAACTCCATCATGAAGTGCGACGTGGACATCCGTAAGGACCTGTATGCCAACACAGTGCTGTCTGGAGGTACC
>TCONS_00001594
GCTCAGCATTGTGAGTTTTCAGTGCACGCTGAGAAGATCTTCACTCCCCTTGTTCACAATAACCTACTAATACACAGCCATGGATGAGGAAATCGCTGCCCTGGTCGTTGACAACGGCTCCGGTATGTGCAAAGCCGGTTTTGCTGGAGATGATGCCCCTCGTGCTGTTTTCCCCTCCATTGTTGGACGACCCAGACATCAGGGAGTGATGGTTGGCATGGGACAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAATACCCCATTGAGCACGGTATTGTGACTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAGGCTCTGTCACTTGCCATGATCTCTTGATAGGAGGTTCAAAAGATCATGTTCGAGACCTTCAACACCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTCTCTCTGTACGCTTCTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTGACCCACACCGTGCCCATCTATGAGGGTTACGCTCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGTGACCTGACAGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAAAGAGAAATTGTCCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGCAGGAGATGGGAACCGCTGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATTGGCAATGAGCGTTTCCGTTGCCCCGAGGCTCTCTTCCAGCCTTCCTTCCTGGG
>TCONS_00001597
ATTGTGAGTTTTCAGTGCACGCTGAGAAGATCTTCACTCCCCTTGTTCACAATAACCTACTAATACACAGCCATGGATGAGGAAATCGCTGCCCTGGTCGTTGACAACGGCTCCGGTATGTGCAAAGCCGGTTTTGCTGGAGATGATGCCCCTCGTGCTGTTTTCCCCTCCATTGTTGGACGACCCAGACATCAGGGAGTGATGGTTGGCATGGGACAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAATACCCCATTGAGCACGGTATTGTGACTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAGGTGTGTTCCTGTGATCAATTTGATTTTCATATTGCCTTATTTGGCTTTCTTCCCCTCTTTGTTCACTTCCTTTCTGTCCATTTCCTCTTAGGCTCTGTCACTTGCCATGATCTCTTGATAGGAGGTTCAAAAGGTTCATCCCTATTTTTTCATTCCTTTTCCCCCTCTTGCATGGTAGCTTCTAACCTTAACTCTCCACAGTTGAGCGTTTTAGCATGGTGTGTTGGAGGCTTTCTTGCCCTGTTGTGCACCCATACTCACGCAGATTTGAGGCTCTGAGTTTGGTTTTTAACCAATTATCTCTTCTACAGATCATGTTCGAGACCTTCAACACCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTCTCTCTGTACGCTTCTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTGACCCACACCGTGCCCATCTATGAGGGTTACGCTCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGTGACCTGACAGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAAAGAGAAATTGTCCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGCAGGAGATGGGAACCGCTGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATTGGCAATGAGCGTTTCCGTTGCCCCGAGGCTCTCTTCCAGC
>TCONS_00001595
GCTCAGCATTGTGAGTTTTCAGTGCACGCTGAGAAGATCTTCACTCCCCTTGTTCACAATAACCTACTAATACACAGCCATGGATGAGGAAATCGCTGCCCTGGTCGTTGACAACGGCTCCGGTATGTGCAAAGCCGGTTTTGCTGGAGATGATGCCCCTCGTGCTGTTTTCCCCTCCATTGTTGGACGACCCAGACATCAGGTACATTTAATAAACCATCCTAATAACATATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTCTCTCTGTACGCTTCTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTGACCCACACCGTGCCCATCTATGAGGGTTACGCTCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGTGACCTGACAGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAAAGAGAAATTGTCCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGCAGGAGATGGGAACCGCTGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATTGGCAATGAGCGTTTCCGTTGCCCCGAGGCTCTCTTCCAGC
>TCONS_00001596
ATTGTGAGTTTTCAGTGCACGCTGAGAAGATCTTCACTCCCCTTGTTCACAATAACCTACTAATACACAGTTTCGCTTTTTTTCCCTACAGCCATGGATGAGGAAATCGCTGCCCTGGTCGTTGACAACGGCTCCGGTATGTGCAAAGCCGGTTTTGCTGGAGATGATGCCCCTCGTGCTGTTTTCCCCTCCATTGTTGGACGACCCAGACATCAGGGAGTGATGGTTGGCATGGGACAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAATACCCCATTGAGCACGGTATTGTGACTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCTGCCATGTATGTGGCCATCCAGGCTGTGCTCTCTCTGTACGCTTCTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTGACCCACACCGTGCCCATCTATGAGGGTTACGCTCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGTGACCTGACAGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAAAGAGAAATTGTCCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGCAGGAGATGGGAACCGCTGCCTCCTCTTCCT
>TCONS_00001598
TCATCAAACTAACCTAATAAAATGACACACTTAAAATGTCTTCTCAAGAATTAATCGTAAATGAGTCGTTTTCAACTAGCTGTCAAACATTAACTGAAATGTAAAGCAGATTAGTGTATAACGTTAATCAAATAATGATTTCTTCTCTGTTCTACCAATAATGGCTCTTGTATAACGTTAGTTTACACATTGTTGTCATTTATAGAGCTGaaacatacagtaaaatacaatatAAGTTTAAATACTATTGGACAATGTCGTACTGCTATGTTTAAACGTCCTGTCATTCCTGCAGCCTAAGTACAGCTTATATAAATGCAACTTTACATCATGCATTGCTCGTTTTTCACagaaataataaactatttaacgTTACTCGCTGTATGTGAGGTTATTTAAAAGTAACGTTAAGCCACAGACATGAAGTCTAGCATCCTTTACTGATTTAACTGTGTTCCAATCCAAATGATATACATATCCTTAATTCAAGTGTTACATCTGCCAATGCTGTGTCAAATCAACTTATCGTGTATTTCCTTATCAAATTATTTCGCCTTTTCGCCGATCCCTGACATACATTATTTCAACCCAGAACTTGAATTTCAAGCAACTAGCTTGAAACTCGCCAAGTGGACGACGGCTGGCCAATCAGACCGCTCGCTGCCGAAAGTTTACCTTATATGGAAGGAGCCGGCCGCAGTGCCGGCTATAAAGCTGTGACCCACCTCACGCTCAGCATTGTGAGTTTTCAGTGCACGCTGAGAAGATCTTCACTCCCCTTGTTCACAATAACCTACTAATACACAGCCATGGATGAGGAAATCGCTGCCCTGGTCGTTGACAACGGCTCCGGTATGTGCAAAGCCGGTTTTGCTGGAGATGATGCCCCTCGTGCTGTTTTCCCCTCCATTGTTGGACGACCCAGACATCAGGGAGTGATGGTTGGCATGGGACAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAATACCCCATTGAGCACGGTATTGTGACTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTCCGTGTTGCCCCTGAGGAGCACCCTGTGCTGCTCACTGAGGCTCCCCTGAATCCCAAAGCCAACAGAGAGAAGATGACACAGGCTCTGTCACTTGCCATGATCTCTTGATAGGAGGTTCAAAAGG

Function

symbol description
actb1 Predicted to be a structural constituent of postsynaptic actin cytoskeleton. Predicted to be located in several cellular components, including actin cytoskeleton; dense body; and focal adhesion. Predicted to be active in actin filament. Is expressed in several structures, including eye; hematopoietic cell; liver; male organism; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Baraitser-Winter syndrome and autosomal dominant nonsyndromic deafness 20. Orthologous to several human genes including ACTB (actin beta).

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005884 actin filament cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0097433 dense body cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0098973 structural constituent of postsynaptic actin cytoskeleton molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000329-1 Predicted to be a structural constituent of postsynaptic actin cytoskeleton. Predicted to be located in several cellular components, including actin cytoskeleton; dense body; and focal adhesion. Predicted to be active in actin filament. Is expressed in several structures, including eye; hematopoietic cell; liver; male organism; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Baraitser-Winter syndrome and autosomal dominant nonsyndromic deafness 20. Orthologous to several human genes including ACTB (actin beta).

Ensembl:

ensembl_id ENSDARG00000037746

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001592 False 1788 mRNA 0.51 6 8649099 8652732
TCONS_00001593 False 1019 mRNA 0.54 4 8649904 8651718
TCONS_00001594 False 924 mRNA 0.54 5 8650096 8652655
TCONS_00001597 False 1173 lncRNA 0.51 3 8650109 8652648
TCONS_00001595 False 769 processed_transcript 0.53 4 8650109 8652655
TCONS_00001596 False 796 mRNA 0.53 4 8650196 8652648
TCONS_00001598 True 1215 mRNA 0.43 4 8650713 8653385

Neighbor

gene id symbol gene type direction distance location
XLOC_001003 fbxl18 coding downstream 2158 8638162 ~ 8646941 (-)
XLOC_001002 NA coding downstream 23833 8612575 ~ 8625266 (-)
XLOC_001001 NA coding downstream 61740 8579155 ~ 8587359 (-)
XLOC_001000 ptcd1 coding downstream 82532 8555323 ~ 8566567 (-)
XLOC_000999 zgc:112980 coding downstream 95801 8539671 ~ 8553298 (-)
XLOC_001005 abcg2b coding upstream 19676 8673061 ~ 8691969 (-)
XLOC_001006 grin2ab coding upstream 110044 8763429 ~ 8928841 (-)
XLOC_001007 socs1b coding upstream 309239 8962624 ~ 8966046 (-)
XLOC_001008 NA coding upstream 321115 8974500 ~ 8977963 (-)
XLOC_001009 NA coding upstream 325520 8978905 ~ 8980671 (-)
XLOC_000998 NA non-coding downstream 139033 8504977 ~ 8510066 (-)
XLOC_000996 NA non-coding downstream 443871 8202390 ~ 8205228 (-)
XLOC_000985 CR855320.6 non-coding downstream 728893 7920119 ~ 7920206 (-)
XLOC_001010 NA non-coding upstream 428457 9081842 ~ 9082772 (-)
XLOC_001015 NA non-coding upstream 485253 9138638 ~ 9139160 (-)
XLOC_001016 BX004779.2 non-coding upstream 503925 9157310 ~ 9162637 (-)

Expression


Co-expression Network