XLOC_001008


Basic Information

Item Value
gene id XLOC_001008
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8974500 ~ 8977963 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003336
ACAATTACTGAAACCAAACACAGCTGTAGAACCGGAGCATTTGTAAACACGGTGTGGTGTAGTGTCACAGCGAGTGTTGAGGGAATACTTACATTTCGAGACACGCATAGTAAGATTTTTGTAGTCCTTTGTTTGTTATGCAGCAGAAAACGTTTTAAATTAGGCCTAACATTATAGTGTATATTTGTGTGCTTGTGCAGACATGCCGACCTCCCCGGTGAAGACACGGATACCGCTGTAAAGTTTTGGCCATCTTGTAACCGAAGTAAAGGTAGACAAATCATAATATAACCAGTGGCTCCTTCAGATAAtgttcttaggggtggccaagtaAGGCCACACTAAATCTTGGGGTAGCACACAAAAAGTAATgaaatgtgtatatattgtgaataatgagtaatgttatatttttgtttctggtaaatgaaataatgaagttTAAGTTAATTCCATGAATTACTCTTGAAACATTGTAATTTATTCCTTGATATAATTCGGCAAGTACacgtgcaaaccaaataaaaatcaataggtaagttatttttcacatactttCATTGTACAACATGCAATATACGCCATgtctaaaataatgaatgaattaagaaaacaaacaaatgaacaaaaggcattactacatatatacacacacttactATACAGACCCTAATACTATCATTTATCCATGTTCCTTTTTGTCCAcagtataatataaaatgtatattttatatatataatacatattcgTCTATTGATGTGCCTTTTTGAAAGATACACCCACAAAATCATTGAGATTTTTGGCCCTTTTAAATCAACCAGCAAAATAACAGAGTTGCTAAATAAATTAGATACTGAAAAGCTGATTtcaaaatgcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatggatttgtGGTTTACAATCAGATAAAACACAACTTTttcatttcaaaaataataatttcttaataaaaaattTGTGCAATCTCAGTGAATCAGCTACGTCGGTGGCActgatcaatccacaataatttagtggctgcattttatttactaatttatttgtttattgattgaaatattgtgaatttaagttagtacatttaaattaataacatcAACAACTAAATCTTATTGGGGTGGTCAGAGTTTACAAAAGGGTGCCCCTGAATATAACATCCTGTTACAATACAAAAATTAGATATAAGTGtaataattaaattgttaattaaaatacatttaaaaaataggctacatttttaaaataaatgtaaaatgtatccTCCTGCTCTCAAAAACAGAGATTTAAAATCTAAGCCTGTATCAGAAAACTGGTGATGCCTAAATCTTATATAATTTTAacagttaattaatttaattattattaattttttatcatcatttattattattatttggatgcgctaatatattttttaacattacaaatattttagatttgtatagatttatataattataattatagattttttattacaaacaaacacatacataataAAAATGCTTCTCTTATGTTCATTGTTAGTCAAAGTATACACCTATAAGTATTAATAACAATTTAAGGTTTAAACaagtgaaaaataaaagaaaacttgcaaaaataaaatatgaaatgtaaaGTGAATGTCAATGTGAACTAACAAAGATGAACACACAATATAAAACAATCTTCCCATATACTGTAGGGCAAAATGAGTTAACACTTAAAAAAGGAacatgcactagttttatatccATCATGTGCTACAGAAGTGAGCCAAATGGATAGCCATTAGTCATTACTTTGTGTTATTTTGACATAGTTCAATTTCAAATAAGCCTAATAATCTTAACCCCCACTTAGACGataaaacatcaaaaaatgaatgtttttgatatcatttaattaaattttttttttattttataataagaaGTCCTAAAATTTGGTGTAGTGAAGCCTACTTGTTGTGGCGTCAATTACGAGCATCAGTGTCTGAGTGGACGATGACGGTTTCTCCATTTCACAGTAATAAGGAACAGAAATGCAGTTTACAGTACAGTACTTTTCTTTGTATTTCCGTTACGTAAAATTGAAAGTTTCCTGAAATGGAAGTTCTCCAGTAAAATGTGGATACTTGGAAAGAACGAACAAAAACAGTTAATGTTAATTTACTAAGTTAATGTCCGCTGCTTATTATGTTTATGTACATATgggtaaatgttttaataatattgtcaatttattagtatttttgggCCAGACTGTGATCCTAAATGTTTTTGTGATCTAAATATTTTTGGTTATATAAACTATTGTTAGTCCGATAGACATGTTTGTTTGGGGTTGTCTTTATTTCTGACTGGACACATTCTGATGTTTAAAAAACATTGAAATGAAGTCATCTTCGACTTATATACTGTTCTCAGCTTTTTGGACGTGGTGTAACAGTAAAATTCTTATATTTAGAAAAGTGTCTTTTCATGACAGAGACAGCTCTTTGGAATTGATTCGCCAACCCTGAAGGAACTGACAGGATGGAGGAAACATTTTAACAGCTACACCTTACAAGGACGCAGAAATGTATGATCATATTTTTGACATTCTTAAGAGCATGTCAGACTGCCGTATGATCAAAGACAACAGTAGACCATGTCTTCTGCTCACATCACTATGTATAATAAtacgtcatttttttttctcccacttaTTCCCTTTTCCAGTTTGTTCTTGCCACATATGGCGTTCTTGCACTCACAGCTGCTGCCTTCATGCTGAGACGCAGCAGGAAGAAGGAGCATGAAACAGCATCTGCCTCCTCATGAACTGCAAATGGAAAGTTTTGAGGGTTAAGAATACAGTAAATTATTTATGATCGCTACATGTGTGGACCATGTTTAATGAAGCTTATGTTTCTACATATGCACCAGATGTGCATTTCTTTATCATGcacacttttttaatttaaaaatggatTGGTTGCGCTTTAGTTTTGTGGCCCCATTTTGACATCCTGTtgactatttatatatataaatttggtatcactttattttgatggtcactttaacacattttgttgaatttaagttacattgcatctacattccaactaattctcattagcaTATAAGTAagctgttaggttggggttagtgtaagttgacatgtacttgcaaagtttcttatagtcagtatcagcagatattaagcaggcagtctactaatactcaaatgataAGTAATTGGCGTGTAGTTGCAATGCAAATTTTAGTCAAAAAATGTGCGATAGGGacatttatacaatttaattAGTATGAAAACTAATGAATTTTTTAAAGGGGTGTGTCCTCAAACTCCACCCCTTATCCTACACCTCATTGaaggataagcaaatcatactaaaatgtaccaatgaga
>TCONS_00001604
CTGACAATTACTGAAACCAAACACAGCTGTAGAACCGGAGCATTTGTAAACACGGTGTGGTGTAGTGTCACAGCGAGTGTTGAGGGAATACTTACATTTCGAGACACGCATAACATGCCGACCTCCCCGGTGAAGACACGGATACCGCTGTAAAGTTTTGGCCATCTTGTAACCGAAGTAAAGAGACAGCTCTTTGGAATTGATTCGCCAACCCTGAAGGAACTGACAGGATGGAGGAAACATTTTAACAGCTACACCTTACAAGGACGCAGAAATTTTGTTCTTGCCACATATGGCGTTCTTGCACTCACAGCTGCTGCCTTCATGCTGAGACGCAGCAGGAAGAAGGAGCATGAAACAGCATCTGCCTCCTCATGAACTGCAAATGGAAAGTTTTGAGGGTTAAGAATACAGTAAATTATTTATGATCGCTACATGTGTGGACCATGTTTAATGAAGCTTATGTTTCTACATATGCACCAGATGTGCATTTCTTTATCATGcacacttttttaatttaaaaatggatTGGTTGCGCTTTAGTTTTGTGGCCCCATTTTGACATCCTGTtgactatttatatatataaatttggtatcactttattttgatggtcactttaacacattttgttgaatttaagttacattgcatctacattccaactaattctcattagcaTATAAGTAagctgttaggttggggttagtgtaagttgacatgtacttgcaaagtttcttatagtcagtatcagcagatattaagcaggcagtctactaatactcaaatgataAGTAATTGGCGTGTAGTTGCAATGCAAATTTTAGTCAAAAAATGTGCGATAGGGacatttatacaatttaattAGTATGAAAACTAATGAATTTTTTAAAGGGGTGTGTCCTCAAACTCCACCCCTTATCCTACACCTCATTGaaggataagcaaatcatactaaaatgtaccaatgaga

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0007601 visual perception biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen molecular_function
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0071916 dipeptide transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093438

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003336 False 3461 lncRNA 0.31 1 8974500 8977960
TCONS_00001604 True 973 lncRNA 0.38 4 8974500 8977963

Neighbor

gene id symbol gene type direction distance location
XLOC_001007 socs1b coding downstream 8454 8962624 ~ 8966046 (-)
XLOC_001006 grin2ab coding downstream 45659 8763429 ~ 8928841 (-)
XLOC_001005 abcg2b coding downstream 282531 8673061 ~ 8691969 (-)
XLOC_001004 actb1 coding downstream 321115 8649099 ~ 8653385 (-)
XLOC_001003 fbxl18 coding downstream 327559 8638162 ~ 8646941 (-)
XLOC_001009 NA coding upstream 942 8978905 ~ 8980671 (-)
XLOC_001010 NA coding upstream 103879 9081842 ~ 9082772 (-)
XLOC_001011 si:ch211-14k19.8 coding upstream 122484 9100447 ~ 9115034 (-)
XLOC_001012 ndufab1a coding upstream 140137 9118100 ~ 9123465 (-)
XLOC_001013 palb2 coding upstream 147060 9125023 ~ 9130136 (-)
XLOC_001002 NA non-coding downstream 349234 8612575 ~ 8625266 (-)
XLOC_001001 NA non-coding downstream 387141 8579155 ~ 8587359 (-)
XLOC_000998 NA non-coding downstream 464434 8504977 ~ 8510066 (-)
XLOC_000996 NA non-coding downstream 769272 8202390 ~ 8205228 (-)
XLOC_000985 CR855320.6 non-coding downstream 1054294 7920119 ~ 7920206 (-)
XLOC_001015 NA non-coding upstream 160675 9138638 ~ 9139160 (-)
XLOC_001016 BX004779.2 non-coding upstream 179347 9157310 ~ 9162637 (-)
XLOC_001018 BX004779.1 non-coding upstream 219896 9197859 ~ 9197966 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location