XLOC_001019 (gng13a)


Basic Information

Item Value
gene id XLOC_001019
gene name gng13a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9227081 ~ 9228007 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001618
AAATCTCTGTGTGCACAAGTGGCATAACGCACTCAAGCTATTCACACAGGAGCTATTAACAATACAGACACTTCATTTCTGAGCGACACAACTCCGAATTCACGATAATTTAGCTTTGAGATGTTGAAATAAGAATAAAATGACGGCTGGTGATTTAGATGGATGAGCTGGATGAAGATCAGCTGAAGAATCATGTGGAAAGCCTGAAGCAACAGCTCAAGTATAACAGAGTCAACACATCCGTCTCTGTTCCAGAGTTAATTAAATGGATGGAGGAGAAAATGACCGAGGATCCATTTGTGAATCCAGATGCCATGAAGGACAACCCGTGGGTGGAGTCGAGCAAATGTGTAATACTCTAGCACAAGAGCTGTCAATCATCCCTATGGCAGCAGAAGTGGCTCCGCCCTCTTACACAGGCTGACTTTGAATAGATGCAAATGAACTCATTGTCAGTGAATCTGCTTTGTTGTTTACTCTCATGATAATAAGAAAGAAAGCAAATGTGAAAACATGTATTTATAAAAGTGTAAGACAACTATACAACAgcacaataaaaagaaaatgaggaac
>TCONS_00001619
AAATCTCTGTGTGCACAAGTGGCATAACGCACTCAAGCTATTCACACAGGAGCTATTAACAATACAGACACTTCATTTCTGAGCGACACAACTCCGAATTCACGATGGATGAGCTGGATGAAGATCAGCTGAAGAATCATGTGGAAAGCCTGAAGCAACAGCTCAAGTATAACAGAGTCAACACATCCGTCTCTGTTCCAGAGTTAATTAAATGGATGGAGGAGAAAATGACCGAGGATCCATTTGTGAATCCAGATGCCATGAAGGACAACCCGTGGGTGGAGTCGAGCAAATGTGTAATACTCTAGCACAAGAGCTGTCAATCATCCCTATGGCAGCAGAAGTGGCTCCGCCCTCTTACACAGGCTGACTTTGAATAGATGCAAATGAACTCATTGTCAGTGAATCTGCTTTGTTGTTTACTCTCATGATAATAAGAAAGAAAGCAAATGTGAAAACATGTATTTATAAAAGTGTAAGACAACTATACAACAgcacaataaaaagaaaatgag
>TCONS_00001620
AAGAATAAAATGACGGCTGGTGATTTAGATGGATGAGCTGGATGAAGATCAGCTGAAGAATCATGTGGAAAGCCTGAAGCAACAGCTCAAGTATAACAGAGTCAACACATCCGTCTCTGTTCCAGAGTTAATTAAATGGATGGAGGAGAAAATGACCGAGGATCCATTTGTGAATCCAGATGCCATGAAGGACAACCCGTGGGTGGAGTCGAGCAAATGTGTAATACTCTAGCACAAGAGCTGTCAATCATCCCTATGGCAGCAGAAGTGGCTCCGCCCTCTTA

Function

symbol description
gng13a Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within phospholipase C-activating G protein-coupled receptor signaling pathway and sensory perception of taste. Predicted to be part of heterotrimeric G-protein complex. Orthologous to human GNG13 (G protein subunit gamma 13).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0050909 sensory perception of taste biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-188 Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within phospholipase C-activating G protein-coupled receptor signaling pathway and sensory perception of taste. Predicted to be part of heterotrimeric G-protein complex. Orthologous to human GNG13 (G protein subunit gamma 13).

Ensembl:

ensembl_id ENSDARG00000024740

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001618 False 573 mRNA 0.40 3 9227081 9228007
TCONS_00001619 False 515 mRNA 0.41 3 9227085 9228007
TCONS_00001620 True 284 mRNA 0.45 2 9227240 9227804

Neighbor

gene id symbol gene type direction distance location
XLOC_001018 BX004779.1 coding downstream 29115 9197859 ~ 9197966 (-)
XLOC_001017 ern2 coding downstream 31321 9169807 ~ 9195760 (-)
XLOC_001016 BX004779.2 coding downstream 64444 9157310 ~ 9162637 (-)
XLOC_001015 NA coding downstream 87921 9138638 ~ 9139160 (-)
XLOC_001014 palb2 coding downstream 93036 9132335 ~ 9134045 (-)
XLOC_001020 si:dkeyp-57d7.4 coding upstream 2237 9230244 ~ 9231952 (-)
XLOC_001021 zgc:136472 coding upstream 6921 9234928 ~ 9249943 (-)
XLOC_001022 ubn1 coding upstream 30924 9258931 ~ 9278037 (-)
XLOC_001023 AL954703.1 coding upstream 80264 9308271 ~ 9321931 (-)
XLOC_001024 NA coding upstream 192817 9420824 ~ 9422275 (-)
XLOC_001010 NA non-coding downstream 144309 9081842 ~ 9082772 (-)
XLOC_001009 NA non-coding downstream 246410 8978905 ~ 8980671 (-)
XLOC_001031 NA non-coding upstream 688369 9916376 ~ 9918812 (-)
XLOC_001037 CR854964.1 non-coding upstream 1042240 10270247 ~ 10272725 (-)
XLOC_001044 NA non-coding upstream 1443845 10671852 ~ 10682149 (-)

Expression


Co-expression Network