XLOC_001025 (micall2b)


Basic Information

Item Value
gene id XLOC_001025
gene name micall2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9459760 ~ 9486214 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001628
CTGGTTTGAAAGTAGCATGATATCACCATCTGCTATCATCATATGCCTTGAGTGAGGGAAGTGTTTAAAACTCCCTCACCTTAAACTCCACCCATGAACAAGACGTCATAACGCTTCTTCTCAGGAGTTTCAGGGATTTCTTAACTGCAGCTGACGGTGAAATTAGtggtgagtgtttgtgtgtgtgagagattaaGCAAAAATCCTTCAGCATTCAGCGTTCCTGACCGTCTTCACCACTTCGGAAAGAGGATATTTCAGCTTCCCAGTCAGTAGTCGTCCGTGGTTGAATCGCATTTGCACCATGGCTGCTGTGAAAGCGCTTCAACAGTGGTGCAAGATCCAGTGTGAAGGATACCGGGACGTGTCGATAACCAACATGACCACATCTTTCCGGGACGGTTTGGCTTTCTGCGCTCTAATTCACAAACACAGACCGGACTTGATAGACTTTGACTCTTTGAGCAAGGaaaatatttatgaaaacaatCAACGGGCTTTCGAAGTGGCAGAGAAGGAGTTGGGAATACCTGCCCTCCTGGATGCTGAAGACATGGTGGCTTTAAAAGTGCCAGATCGCCTTAGTATTCTGACTTATGTGTCCCAGTACTACAATTATTTCCACGGGCGCTCTCCCATTGGAGGAATGGGAGGGATTAAAAGACCAGCTGAAGAGTCTAATGAAGCGCCATCTGGGAAGAAGAACCCACCTGTCATTGCTAAAGTTCTTCCCTCACCTAAGCCAGCCACGGAGAATAAAACACCCAAACCGGCGAATGAAAATAAGAGAGAGGTTTTGACTGAACGTGCCAATAAATCGTCAACTCCGAGCAGCAACTGTAGTGTGTGCAACCAACATGTTCACCTCGTCCAGCGCCACCTAGTAGATGGAAAACTGTATCACAGGAACTGCTTTAAATGCAAAGAGTGTTCCACTATTCTCCTCTCTGGCACCTACAAGGCTGGAAAAGAACCAGGCACTTTCATCTGCAAGACACACACGAGCATAGAGAAGCCTCTAACTACACGCTTCACGGCACCATCCAAAACACAATCCACCTTTATAAACAAGCCTGACCAGAGTGCGTTAGGTGGAAGTACTGGTAAAGCTAGTTTAAATACGAACACATCTAAATTGGGTTGGCTGGCCAACAAAAGTGACCGCATTCCCATGCGTGGGTTCACCGACACACCTACTCCAGCAGTTCAGCTCACGCCAACGGCAAAAGCAACACCCACACCAGACACTACAACAGCGAAATCCCCCTCAGGCCCCAGATCTGCCACTGAATCTCTTAAACCTGTGAGCAACACTGTTCAGAAGAACCAAGAGGCCAGAATGAGattCTTTGAGTCCAGCAGCAGCAGCCCCAGCAGTGTTGTGCCTGCCAGTAAGAGCACCTCATCATACACCTCAACTACATCAGTGAGTACTGCAGGTGTTAAAACTACAGCACCAGAAACTACAACACCCAGAGTCCCTGCCGGAGCAGGTAAAGGCAGAGTTCTGCTCCGAGTGGGAGACTGGGCAAAATCACAGGACACAGAAAAAGAGAAGGAGAatgaaaaggaaaaggaaaaagcCAAGGCTGTGATTGGGAAGATGGTGAAAGTGGACAAAGATAGCAACAGCTCATCTGCTAGTCCAGCTGGGCTGAAAGCAAACAGCAGTAATGTTCCCCCTCTGGAATCTAATGCTAAAGCCCCCTTTGGTCGGGTGCGTCTCAAAGCGCTTGAAGCCAGTGGTGAAACTACTGCTCCTGCCACTACAGTCCCATCCTGGATGAAAGAGAAGAGCTTATCCAGGAATGTGAACACACCGTCATCTAACAGCAAGGAAAACGATACGGTTCCATCTGACTGGAGATCAATGCTCAAGCCTGTTTCAAAaCCTGTCAGTAATCTAGAAAGCAAGGGCTTACCCGCCAGGAGGACAGAAGCAGTTTCTTCTCCAAAGACATCTGTTCCTGCTTCATCTACAACAACCATCTCTATTAGCATcagctcctccaaaacacccttAACTACCCCACTGAAAAATGGGTCAAAACCTAATGACTCCAGCAGCGTATTTCCAGTTAGTCCCTCTGGGACAGAGACGCACAAATCACACAAGccGGGTTACATTCCTAAAGAAGACATTCAGAAAGAGCTGAAGGAGATTGAGATGAATATGAACGAGTTGGAGAAAAAAGGAGTAGAGCTGGAAAAACAACTCCGACAATGTGATGAGGATGGAGAAGAGGACGCATTAATGAATGACTTAATGGTGGACTGGTTTACCCTCATCAGAAACAAGCAGGTCTACATGAGACGGGAGTCTGAGCTTGTTTATATTGCCAGGACGCAGGATCTTGAGGAAGAGCAGCCCAGTGTTGATGCCGAACTCCGGAGACTTATGGAGAAACCAGATCATCTAAAGACTTTATGGGATCGTAAACGAGAGGAAGAGCTGATGGCTAAACTGGTGGAGATTGTTAATGACCGTAATGCTATAGTGGAGGGTCTGGATGAAGACAGACTGAGggaggaagaggaggatgagCAGCTGAATAAGATGATGCAGAGTTTTGATATGAAGAAGGAAAAGGTCAAGAAGATGTCTCCAGTAACTCGATGGTTTAGCATGAGAAAACGGAGGTCTTCAGAAGATTGATCgtcttgtagtttttgtttttgtgtgtcttcCAGAACAATGTTTCTGCCACAGTTTGAGGTCAGATCTCAAAATATAAACTGCAGTCACACGCTCTTCAAAACATGGTGTTTTTGTGAAATGCCATCATTACTCATTTTCACACTCTTCATTTCACATACGTTTGCACTTGTTTTGTTGTTCAGACCTCTGTCTGTTGTCTTTATGGGTGTGATTTTTGTCATTTGTTAGCAAACGCTTTTGCACTTGAATCTTCTGAATAATGTCTCTCAGTCAGTGTTCCATTAGGGAGTTGGACAGTGTCGAGAGAGAGTCTTACTGATTCACATTGGATCAATGCTGAAAATGGACAGGTTGAGGTCTGATCTCAAATATATTCTAATACAGAGAATTgactttttattataaatgtttttgtaaatagaAACAATCATATTTTAGCGCTTTTAAAAGGCAtcgttttaattgtgttttatgctGCACTTCTCCTGTGTGAGCTGCAGGGGGCAGACTGCGACCAACTTCATTGTTTGCCATCTTAAATTCTCAACAGACTTGAGTAATGAGAATCTTTTTTTTCTCATCTAAGAAATGTAAGATTTAAGAGTGAGATGTTGCTCCGTATGCATTTAACCACAGCCCATAGCTTTTAAAtcatgtaaatattttttcatgTGACTTGTTTTTTCAAAATTGAGTTGTCTGCTTGTGGTGTTTACTTTTTTTGATTTAAATGTTCCTTTATTCGCTCTCTTTTTGTTATATTTGGTGTGTAACAAGCTGTTTATAATTTAAAGGTCTCTATATTTTTTATCCAGCACCCAGCACTTAATTGCAAACATTTATGCTGTGTACTGTCATTCACTTTGCTgtgaatacatatttaaaatcaattgaaatgacttttttttttcttcttcttcttcttcttcttttttttattccattcaCAGTTATTTAATGTATATGATGAGTTCACCTTTTCTCCAATGCagcttttttgttctttttagttGCATCTTCTTTTCCATAAGCAAGGCACACATTTAGTGATTTCCATTCACTATTAGGTTCTCTCTCATATGCAAACTtcagaagtttaaaaaaaatgcaccCCTTAAGGAATCTCTTAATTTACAACTTAAATTAATC
>TCONS_00001629
GATTTCTTAACTGCAGCTGACGGTGAAATTAGtgAGGATATTTCAGCTTCCCAGTCAGTAGTCGTCCGTGGTTGAATCGCATTTGCACCATGGCTGCTGTGAAAGCGCTTCAACAGTGGTGCAAGATCCAGTGTGAAGGATACCGGGACGTGTCGATAACCAACATGACCACATCTTTCCGGGACGGTTTGGCTTTCTGCGCTCTAATTCACAAACACAGACCGGACTTGATAGACTTTGACTCTTTGAGCAAGGaaaatatttatgaaaacaatCAACGGGCTTTCGAAGTGGCAGAGAAGGAGTTGGGAATACCTGCCCTCCTGGATGCTGAAGACATGGTGGCTTTAAAAGTGCCAGATCGCCTTAGTATTCTGACTTATGTGTCCCAGTACTACAATTATTTCCACGGGCGCTCTCCCATTGGAGGAATGGGAGGGATTAAAAGACCAGCTGAAGAGTCTAATGAAGCGCCATCTGGGAAGAAGAACCCACCTGTCATTGCTAAAGTTCTTCCCTCACCTAAGCCAGCCACGGAGAATAAAACACCCAAACCGGCGAATGAAAATAAGAGAGAGGTTTTGACTGAACGTGCCAATAAATCGTCAACTCCGAGCAGCAACTGTAGTGTGTGCAACCAACATGTTCACCTCGTCCAGCGCCACCTAGTAGATGGAAAACTGTATCACAGGAACTGCTTTAAATGCAAAGAGTGTTCCACTATTCTCCTCTCTGGCACCTACAAGGCTGGAAAAGAACCAGGCACTTTCATCTGCAAGACACACACGAGCATAGAGAAGCCTCTAACTACACGCTTCACGGCACCATCCAAAACACAATCCACCTTTATAAACAAGCCTGACCAGAGTGCGTTAGGTGGAAGTACTGGTAAAGCTAGTTTAAATACGAACACATCTAAATTGGGTTGGCTGGCCAACAAAAGTGACCGCATTCCCATGCGTGGGTTCACCGACACACCTACTCCAGCAGTTCAGCTCACGCCAACGGCAAAAGCAACACCCACACCAGACACTACAACAGCGAAATCCCCCTCAGGCCCCAGATCTGCCACTGAATCTCTTAAACCTGTGAGCAACACTGTTCAGAAGAACCAAGAGGCCAGAATGAGattCTTTGAGTCCAGCAGCAGCAGCCCCAGCAGTGTTGTGCCTGCCAGTAAGAGCACCTCATCATACACCTCAACTACATCAGTGAGTACTGCAGGTGTTAAAACTACAGCACCAGAAACTACAACACCCAGAGTCCCTGCCGGAGCAGGTAAAGGCAGAGTTCTGCTCCGAGTGGGAGACTGGGCAAAATCACAGGACACAGAAAAAGAGAAGGAGAatgaaaaggaaaaggaaaaagcCAAGGCTGTGATTGGGAAGATGGTGAAAGTGGACAAAGATAGCAACAGCTCATCTGCTAGTCCAGCTGGGCTGAAAGCAAACAGCAGTAATGTTCCCCCTCTGGAATCTAATGCTAAAGCCCCCTTTGGTCGGGTGCGTCTCAAAGCGCTTGAAGCCAGTGGTGAAACTACTGCTCCTGCCACTACAGTCCCATCCTGGATGAAAGAGAAGAGCTTATCCAGGAATGTGAACACACCGTCATCTAACAGCAAGGAAAACGATACGGTTCCATCTGACTGGAGATCAATGCTCAAGCCTGTTTCAAAACGCTCTGTTCCTCCCACTTCTTCAAGCTCTGCTGGGATTGGCTGTCATGATTTGCGTGTCAAGCCGCTGCGTCCTATAAGAGCAGCGGTGGGTCGAATCTGAAATAAATCATGCTCTATTCACTCATGTGCTGCTTCCATCAAGATCTTTCTACTGTAAATTCCTGTTTAACTTTCTTGCCCACCTTCACAAACTTTAACCCATCAGAGaCCTGTCAGTAATCTAGAAAGCAAGGGCTTACCCGCCAGGAGGACAGAAGCAGTTTCTTCTCCAAAGACATCTGTTCCTGCTTCATCTACAACAACCATCTCTATTAGCATcagctcctccaaaacacccttAACTACCCCACTGAAAAATGGGTCAAAACCTAATGACTCCAGCAGCGTATTTCCAGTTAGTCCCTCTGGGACAGAGACGCACAAATCACACAAGccGGGTTACATTCCTAAAGAAGACATTCAGAAAGAGCTGAAGGAGATTGAGATGAATATGAACGAGTTGGAGAAAAAAGGAGTAGAGCTGGAAAAACAACTCCGACAATGTGATGAGGATGGAGAAGAGGACGCATTAATGAATGACTTAATGGTGGACTGGTTTACCCTCATCAGAAACAAGCAGGTCTACATGAGACGGGAGTCTGAGCTTGTTTATATTGCCAGGACGCAGGATCTTGAGGAAGAGCAGCCCAGTGTTGATGCCGAACTCCGGAGACTTATGGAGAAACCAGATCATCTAAAGACTTTATGGGATCGTAAACGAGAGGAAGAGCTGATGGCTAAACTGGTGGAGATTGTTAATGACCGTAATGCTATAGTGGAGGGTCTGGATGAAGACAGACTGAGggaggaagaggaggatgagCAGCTGAATAAGATGATGCAGAGTTTTGATATGAAGAAGGAAAAGGTCAAGAAGATGTCTCCAGTAACTCGATGGTTTAGCATGAGAAAACGGAGGTCTTCAGAAGATTGATCgtcttgtagtttttgtttttgtgtgtcttcCAGAACAATGTTTCTGCCACAGTTTGAGGTCAGATCTCAAAATATAAACTGCAGTCACACGCTCTTCAAAACATGGTGTTTTTGTGAAATGCCATCATTACTCATTTTCACACTCTTCATTTCACATACGTTTGCACTTGTTTTGTTGTTCAGACCTCTGTCTGTTGTCTTTATGGGTGTGATTTTTGTCATTTGTTAGCAAACGCTTTTGCACTTGAATCTTCTGAATAATGTCTCTCAGTCAGTGTTCCATTAGGGAGTTGGACAGTGTCGAGAGAGAGTCTTACTGATTCACATTGGATCAATGCTGAAAATGGACAGGTTGAGGTCTGATCTCAAATATATTCTAATACAGAGAATTgactttttattataaatgtttttgtaaatagaAACAATCATATTTTAGCGCTTTTAAAAGGCAtcgttttaattgtgttttatgctGCACTTCTCCTGTGTGAGCTGCAGGGGGCAGACTGCGACCAACTTCATTGTTTGCCATCTTAAATTCTCAACAGACTTGAGTAATGAGAATCTTTTTTTTCTCATCTAAGAAATGTAAGATTTAAGAGTGAGATGTTGCTCCGTATGCATTTAACCACAGCCCATAGCTTTTAAAtcatgtaaatattttttcatgTGACTTGTTTTTTCAAAATTGAGTTGTCTGCTTGTGGTGTTTACTTTTTTTGATTTAAATGTTCCTTTATTCGCTCTCTTTTTGTTATATTTGGTGTGTAACAAGCTGTTTATAATTTAAAGGTCTCTATATTTTTTATCCAGCACCCAGCACTTAATTGCAAACATTTATGCTGTGTACTGTCATTCACTTTGCTgtgaatacatatttaaaatcaattgaaatga
>TCONS_00001630
GTCGTCCGTGGTTGAATCGCATTTGCACCATGGCTGCTGTGAAAGCGCTTCAACAGTGGTGCAAGATCCAGTGTGAAGGATACCGGGACGTGTCGATAACCAACATGACCACATCTTTCCGGGACGGTTTGGCTTTCTGCGCTCTAATTCACAAACACAGACCGGACTTGATAGACTTTGACTCTTTGAGCAAGGaaaatatttatgaaaacaatCAACGGGCTTTCGAAGTGGCAGAGAAGGAGTTGGGAATACCTGCCCTCCTGGATGCTGAAGACATGGTGGCTTTAAAAGTGCCAGATCGCCTTAGTATTCTGACTTATGTGTCCCAGTACTACAATTATTTCCACGGGCGCTCTCCCATTGGAGGAATGGGAGGGATTAAAAGACCAGCTGAAGAGTCTAATGAAGCGCCATCTGGGAAGAAGAACCCACCTGTCATTGCTAAAGTTCTTCCCTCACCTAAGCCAGCCACGGAGAATAAAACACCCAAACCGGCGAATGAAAATAAGAGAGAGGTTTTGACTGAACGTGCCAATAAATCGTCAACTCCGAGCAGCAACTGTAGTGTGTGCAACCAACATGTTCACCTCGTCCAGCGCCACCTAGTAGATGGAAAACTGTATCACAGGAACTGCTTTAAATGCAAAGAGTGTTCCACTATTCTCCTCTCTGGCACCTACAAGGCTGGAAAAGAACCAGGCACTTTCATCTGCAAGACACACACGAGCATAGAGAAGCCTCTAACTACACGCTTCACGGCACCATCCAAAACACAATCCACCTTTATAAACAAGCCTGACCAGAGTGCGTTAGGTGGAAGTACTGGTAAAGCTAGTTTAAATACGAACACATCTAAATTGGGTTGGCTGGCCAACAAAAGTGACCGCATTCCCATGCGTGGGTTCACCGACACACCTACTCCAGCAGTTCAGCTCACGCCAACGGCAAAAGCAACACCCACACCAGACACTACAACAGCGAAATCCCCCTCAGGCCCCAGATCTGCCACTGAATCTCTTAAACCTGTGAGCAACACTGTTCAGAAGAACCAAGAGGCCAGAATGAGattCTTTGAGTCCAGCAGCAGCAGCCCCAGCAGTGTTGTGCCTGCCAGTAAGAGCACCTCATCATACACCTCAACTACATCAGTGAGTACTGCAGGTGTTAAAACTACAGCACCAGAAACTACAACACCCAGAGTCCCTGCCGGAGCAGGTAAAGGCAGAGTTCTGCTCCGAGTGGGAGACTGGGCAAAATCACAGGACACAGAAAAAGAGAAGGAGAatgaaaaggaaaaggaaaaagcCAAGGCTGTGATTGGGAAGATGGTGAAAGTGGACAAAGATAGCAACAGCTCATCTGCTAGTCCAGCTGGGCTGAAAGCAAACAGCAGTAATGTTCCCCCTCTGGAATCTAATGCTAAAGCCCCCTTTGGTCGGGTGCGTCTCAAAGCGCTTGAAGCCAGTGGTGAAACTACTGCTCCTGCCACTACAGTCCCATCCTGGATGAAAGAGAAGAGCTTATCCAGGAATGTGAACACACCGTCATCTAACAGCAAGGAAAACGATACGGTTCCATCTGACTGGAGATCAATGCTCAAGCCTGTTTCAAAACGCTCTGTTCCTCCCACTTCTTCAAGCTCTGCTGGGATTGGCTGTCATGATTTGCGTGTCAAGCCGCTGCGTCCTATAAGAGCAGCGGTGGGTCGAATCTGAAATAAATCATGCTCTATTCACTCATGTGCTGCTTCCATCAAGATCTTTCTACTGTAAATTCCTGTTTAACTTTCTTGCCCACCTTC

Function

symbol description
micall2b Predicted to enable metal ion binding activity. Acts upstream of or within swimming behavior. Is expressed in brain; cloaca; common cardinal vein; heart; and pectoral fin. Orthologous to human MICALL2 (MICAL like 2).

GO:

id name namespace
GO:0036269 swimming behavior biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5803 Predicted to enable metal ion binding activity. Acts upstream of or within swimming behavior. Is expressed in brain; cloaca; common cardinal vein; heart; and pectoral fin. Orthologous to human MICALL2 (MICAL like 2).

Ensembl:

ensembl_id ENSDARG00000017834

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001628 False 3808 mRNA 0.43 17 9459760 9486214
TCONS_00001629 False 3553 nonsense_mediated_decay 0.44 19 9460010 9486080
TCONS_00001630 True 1804 mRNA 0.48 10 9469910 9485939

Neighbor

gene id symbol gene type direction distance location
XLOC_001024 NA coding downstream 37485 9420824 ~ 9422275 (-)
XLOC_001023 AL954703.1 coding downstream 137829 9308271 ~ 9321931 (-)
XLOC_001022 ubn1 coding downstream 181723 9258931 ~ 9278037 (-)
XLOC_001021 zgc:136472 coding downstream 209817 9234928 ~ 9249943 (-)
XLOC_001020 si:dkeyp-57d7.4 coding downstream 227808 9230244 ~ 9231952 (-)
XLOC_001026 si:ch73-12o23.1 coding upstream 13431 9499645 ~ 9527200 (-)
XLOC_001027 ugt5b5 coding upstream 140063 9626277 ~ 9629724 (-)
XLOC_001028 ugt5b2 coding upstream 142947 9629161 ~ 9652725 (-)
XLOC_001029 mad1l1 coding upstream 253156 9739370 ~ 9858508 (-)
XLOC_001030 C1H7orf26 coding upstream 387081 9873295 ~ 9885326 (-)
XLOC_001018 BX004779.1 non-coding downstream 261794 9197859 ~ 9197966 (-)
XLOC_001016 BX004779.2 non-coding downstream 297123 9157310 ~ 9162637 (-)
XLOC_001015 NA non-coding downstream 320600 9138638 ~ 9139160 (-)
XLOC_001031 NA non-coding upstream 430162 9916376 ~ 9918812 (-)
XLOC_001037 CR854964.1 non-coding upstream 784033 10270247 ~ 10272725 (-)
XLOC_001044 NA non-coding upstream 1185638 10671852 ~ 10682149 (-)
XLOC_001045 NA non-coding upstream 1252951 10739165 ~ 10740441 (-)
XLOC_001049 BX323090.1 non-coding upstream 1383903 10870117 ~ 10870241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00985328_00994984 NA coding CI01000300 null 985295 ~ 995206 (-)