XLOC_001029 (mad1l1)


Basic Information

Item Value
gene id XLOC_001029
gene name mad1l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9739370 ~ 9858508 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001645
AGCGGCTTCTCAACCAAcgaaaacaaaactgcagcaagtTCAAACTACTGGAGGCTTCAGCGACAAGAGAGAAACGAGTgAGGTTTTATCAGTATGGACGATATAGAGGATGACACCACAATCTTCTCAACGCTTAAATCTTTCAAGAGTTTAATATCATGCCCAGAACGTTCCTTGCTGGAAACTGAGCCAGCCTATGGAAGAAGTGACCTTCAGAAGCTCTATACTAAAAGAGTGGAGTTGGAGGAGGCTGCCGAGCGCGTTCGTTCCCACACCAGCCTGATTCAGCTCACTCAAGAGAAACAACAGATGGAGCTGAGTCACAAACGAGCCCGCATAGAGCTGGAGAAAGAGGCGCACAGCAGCTCCAGAGACTTACAGAGGGAAATTGACCGTAACAGGGACTTGCAGATGAAGATCAGACGTCTGGAAGAAAGAGAAGAGAAAGCAAATCAAGCCCTTAATGAACAAATGGAAAACAACAAAGCTTTAAAGCGCAACCTCGAGGAACTCCACAAGAAAGCAAATGAAAAGGACAGCAAACTTACCGAGGCAGAGCAGattatCAGTGAGTTGAAAGATGAGACGAGAAGGCTCGGTCAGCAGATCCAGATTCAGGAGTCTAAATTCTCCACCCAGAACCTGGAGATCCAGGCCTTGCAGGAACAACTGGATGTGCAGCGCAAGAAGTTTCAGGACATCAGTCAGAAGTACCAAAATCTGCAGTCCTCTCATTCAACCAGCACAGAGAGCGAACTCAAGATGAAGGAGTTGGAGAGGCGTTTGGCTCTTCAGGAACAGGACTCCGTGATTGTGAAGAACATGAAATCTGAAGTGGCCAGACTGCCTGAAATGGAGCGGGAAATTAAACGTCTGCGTGAGGAAAACTCTTTCTTAAGGGAGACAAAAGAGAACAACAGTTTGCTGAAGGAAGAGACCGAGGGCTTGAGGAGGAAGCTGGAGAGGCTGGAGAAAGTGATGGAGGAGAAAATCAAAGTGGAGTTGGAGAAAGAGAAAATGGAACGCGAGCTGCAGGCTTGGGAAAACATTGGCCAGGCTACAGGACTTAATATTAGgaaACCTGAGGATTTATCCAGGGAGGTGATACAGATTCAGCAGCGAGAACTGAACTTCAAACAGCAGAACTATAGCCTCAATAGCAGTGTTCGCTCTGTGGAAAAGGCCCGCTCTGAGCTCCTGACCGAGATTGCTCAGCTGCGCGCCAAGGCTCAAGAAGAACAGAAGAAACGAGAGAACCAGGACTCACTGGTCCGTCGCTTGCAGAAGAGAGTCTTACTGCTCACCAAGGAGCGCGATGGAATGAGGGCCATATTAGAGTCGTACGACAGCGAGCTGGCCACAAGTGAATACTCTCCTCAGCTCACACTCCGGGTCAAGGAGGCAGAGGACATGCTGCAGAAAGTCCAGGCTCATAATGCAGAGATGGAGACTCAACTGTCCAAAGCCCAGGAGGAGGCTGGCTCCTTCAAATTACAAGCTCAGATGGTGGCTGCTGAACTTGAGGCTCTGAAAGAGCAGCAGGTGTCTAATGCCGAGAGAAGCAGCTCAGTGACAGCAGAGGAAATCAGCTCTCTCAGgcAGAAGATTGAGGAGTTGGAAGCAGAACGTCAGCGTTTGGAAGAGCAAAATAACATTCTGGAGATGAGACTAGAGAGGCATAACCTCCAGGGAGACTACGACCCTGTTAAGACGAAGGTGGTCCACCTGCAGATGAACCCCACCAGCATGGCAAAGCAGCAGCGGGCGGATGAGGTGGAGCAGCTCAGGGTGGAGTGTCAGCGTTTGAGGGACCGACTCCGCAAAATCGAAGTGGCTGGTGGCATGACAACAGATGACACTACCCTCATCATCCCACCGTCACAGGAAATACTGGACCTGCGTAAGCAAATGGAAAGTGCAGAACTGAAGAACCAGCGCTTGAAGGAGGTGTTTCAGAAGAAGATTCAAGAGTTTCGTACTGCATGCTACGTCCTGACTGGGTACCAGATCGACATCACTGTGGAGAACCAGTACCGGCTCACTTCCGTCTACGCCGAGCATATGGAGGATTCATTACTGTTTAAGTCTACTGGTCCAGTGGGTAGCGGCAGCATGCAGCTGTTGGAGACGGATTTCTCCCGCACTCTAACTGGACTGGTAGATCTGCACCTCTTCCATCAGAAGAGCATCCCCGTGTTCCTCAGCGCGGTCACCATCGAGCTGTTCAGCCGCCAGACTGTCGCCTGATTCACCCAGCTCTGCTCAGCTACACAGTGTTCAGggagcttcacacacacacagatatccaCATAACTGCTAGGGAGTTAATTTCACTTCTTTGCAGAAGTGTCATTACAAAGATGTAAAAGCCAATCTGAAGGTTGTCATATCAAAACAATCTATATCACAGCATTTCAGTCTTATAGTGACTATTGTATGTTTTCGTTGATTTCTTTTAATGCTGTAAAACccacattgtgtttttttaaacggGTTCAAACATATAGGAGGGAAGTATTATTtgatcttctctttttttttacaaacatctTATTTTATGGCAGTTTGTTTGCCTGTATAGCGGGAAGAAATAAAGGCATATTAAACCATTATTTGTTTGGGGTTTACCAGATTTCAAAACATCCCCTGTGTTCAAAATGAATAATGATTTATACGCCTGGTTAGAAACCGCTTTTATTGTCTTTCTTCAAACAATTGAAATAGCCTAGTGATCACTATTATCAATTCCCTGTTGAATTGAGGATAAACTAATATCCCCATTGAAACCACAATAATTGCTCGGATGCTTGGATGCATCAAGTTTTATGTCCTTTAAAGGTTTGCTTTATACTATTTTGGCAACAAATCTTAGTTGATGTGGGAGTATTTAAATTCCCTGGCTGTTTTAGCTGGCAGTGGTTATTACTCAATTTTCCACGTCGTATTCATTTGAACGGCACATAAACTGCCACAGTTTCCTATCCTGCACACACATTAAGATTTAATCTCGTATGACTCGGGCTGCTTTCCGATGATTTTTGTCTCAAATCTGTCGCACTAGCAATGCAAAGTGTCACTGTGCCAAAGTAATTAGCAAAGAATGTTACCCTCATCCTGCATCCATGGTTTCAGGTGGTGCGCAGAGAGCTTTGCCAGTGTCTCTGCTTTCTTCTCATGCCAGCGAATACATTGCGGATGCAATGTTCCTGCTGTTAGCTGTTCCTATTATATGCAAACTCAGTCCTTTGGCTGGCAGAATCAATTCTGAAAAACAGCTACTATGCACAGACGCATGCACAAGCTGGCACTTCCTGTCACTTTTGGCTTCTGTTGTTTTCACGCTTTCTCCTACTTTTTCAGTTCTTTATTTGATATAATTTGTTTAACAATTCAGTGGGTCAGGCATCCTTGGCCTTTAAATCGAATCCTGCCCCATTCCATGGGTACCCATTTCCTCTTTCATcgcacatttttatattttattcattttatcatTTATCATCTGGAGTCGAATAAAGTGGCCTCTCATTGtttatttatgaacatttttgtttttcatgaaCGGTCTCTATATAATTCATTGCTTTGGGGTGGAAAAGGATATATATGCTAATGAGGAGCTGTAAATGGATAAATAATGAATTTTTGGAGAAGCTTTAGACCAAACAACGACACTGcagcagaaaaaaattattaaataaacaaaacaaaaactgactTCATAGTCAGGAGAGCCAAGTTTTTATTAAAATCCAAGTATTTATATTCGGTGGTAAATTATGTGTGAATATTAATTTGCAATATTGATTGATTTGGATTTTATAGCATCTTTCATGAATCATAAAAATGTCATTGCTGAAAActagagtaatgatgctgaaaatcacaggaataaatgaaaCTTTAGTGTAGGGCAAAACATTCTGCTTGTATAACATCACCAATAATATAAGAAAATGTAGGTCAACACTTTGTGTTATTTTCATCTAATGCAATTATATTCATGCTTTTACTGTGCACAGTATACACTATCTGACGAAAG
>TCONS_00001646
GCACAGGAACTCTGAGGCCAGTGCCAAAATAATAGAGTCCTAAATGAGAGTTTGCTATCTGTGGGACGAATGAGGAGCGCGATGGAATGAGGGCCATATTAGAGTCGTACGACAGCGACTGTTCAGCCGCCAGACTGTCGCCTGATTCACCCAGCTCTGCTCAGCTACACAGTGTTCAGggagcttcacacacacacagatatccaCATAACTGCTAGGGAGTTAATTTCACTTCTTTGCAGAAGTGTCATTACAAAGATGTAAAAGCCAATCTGAAGGTTGTCATATCAAAACAATCTATATCACAGCATTTCAGTCTTATAGTGACTATTGTATGTTTTCGTTGATTTCTTTTAATGCTGTAAAACccacattgtgtttttttaaacggGTTCAAACATATAGGAGGGAAGTATTATTtgatcttctctttttttttacaaacatctTATTTTATGGCAGTTTGTTTGCCTGTATAGCGGGAAGAAATAAAGGCATATTAAACCAT

Function

symbol description
mad1l1 Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore and mitotic spindle assembly checkpoint signaling. Predicted to be located in nucleus. Predicted to be active in kinetochore; mitotic spindle; and nuclear envelope. Human ortholog(s) of this gene implicated in lymphoma and prostate cancer. Orthologous to human MAD1L1 (mitotic arrest deficient 1 like 1).

GO:

id name namespace
GO:0007094 mitotic spindle assembly checkpoint biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0000776 kinetochore cellular_component
GO:0072686 mitotic spindle cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1081 Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore and mitotic spindle assembly checkpoint signaling. Predicted to be located in nucleus. Predicted to be active in kinetochore; mitotic spindle; and nuclear envelope. Human ortholog(s) of this gene implicated in lymphoma and prostate cancer. Orthologous to human MAD1L1 (mitotic arrest deficient 1 like 1).

Ensembl:

ensembl_id ENSDARG00000033852

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001645 False 4042 mRNA 0.44 18 9739370 9858508
TCONS_00001646 True 508 processed_transcript 0.40 3 9740802 9816875

Neighbor

gene id symbol gene type direction distance location
XLOC_001028 ugt5b2 coding downstream 86645 9629161 ~ 9652725 (-)
XLOC_001027 ugt5b5 coding downstream 109646 9626277 ~ 9629724 (-)
XLOC_001026 si:ch73-12o23.1 coding downstream 212170 9499645 ~ 9527200 (-)
XLOC_001025 micall2b coding downstream 253156 9459760 ~ 9486214 (-)
XLOC_001024 NA coding downstream 317095 9420824 ~ 9422275 (-)
XLOC_001030 C1H7orf26 coding upstream 14787 9873295 ~ 9885326 (-)
XLOC_001031 NA coding upstream 57868 9916376 ~ 9918812 (-)
XLOC_001032 pgap6 coding upstream 61401 9919909 ~ 9940494 (-)
XLOC_001033 si:dkeyp-75b4.7 coding upstream 114057 9972565 ~ 9980810 (-)
XLOC_001034 si:dkeyp-75b4.9 coding upstream 128167 9986675 ~ 9988840 (-)
XLOC_001023 AL954703.1 non-coding downstream 417439 9308271 ~ 9321931 (-)
XLOC_001018 BX004779.1 non-coding downstream 541404 9197859 ~ 9197966 (-)
XLOC_001016 BX004779.2 non-coding downstream 576733 9157310 ~ 9162637 (-)
XLOC_001015 NA non-coding downstream 600210 9138638 ~ 9139160 (-)
XLOC_001037 CR854964.1 non-coding upstream 411739 10270247 ~ 10272725 (-)
XLOC_001044 NA non-coding upstream 813344 10671852 ~ 10682149 (-)
XLOC_001045 NA non-coding upstream 880657 10739165 ~ 10740441 (-)
XLOC_001049 BX323090.1 non-coding upstream 1011609 10870117 ~ 10870241 (-)

Expression


Co-expression Network