CI01000063_05198199_05217488 (RHOQ)


Basic Information

Item Value
gene id CI01000063_05198199_05217488
gene name RHOQ
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5198166 ~ 5217644 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05198199_05217488.mRNA
AAATTTGTGAAGCGGGGTGGAGGAAATGGCATTTCAGCTGTTTTTGCAGACCGAGCGCGGCGCTGCTGCTGGTGGTGACGCCTGAAGGGAGCTCGAATAAAGCGGGATATATCTCTAGCAGATGAAGATGGTGAATTCAAGTGTTTTATTATCGTCATGGCAAACGGAACCGGCAGCATCATGTTGAAATGCGTGGTCGTCGGCGACGGCGCCGTTGGAAAAACTTGTCTGCTGATGAGCTATGCCAACGACGCCTTTCCAGAGGAATATGTTCCCACTGTCTTTGATCATTATGCAGTGAGTGTGACCGTTGGGGGAAAACAGTACCTGCTGGGGCTGTATGACACTGCAGGTCAGGTTGTTGCAACAAATCCTGATTTGTCATGTGGCAGGGACAGGATGATCTCCCAACAGCAGAAGCAAACCGTTTCGGCTGTAATTCTTAAGGTTATATATCGCAGGTTCATATCTCAGCCACAGAACGGAACATTTAGCCTTGAAACATTGACAGTTGCAAATGCAAAGGTGCTCCTAGATGAGAGACGTCACGGTAAATTAAGCTCTGAAGCTCAGAGACTCCGGCTCCACATTTCTGAGGAGGACTATGATCGCCTGCGACCCCTGTCCTACCCCATGACAGATGTCTTCCTCATTTGCTTCTCCGTGGTGAATCCGGCCAGCTTCCAGAACGTAAGAGAGGAGTGGGTCCCTGAGCTGCAGGAGTACGCGCCCAACGTCCCTTACCTGCTCATTGGCACTCAGATTGATCTGCGGGATGATCCCAAGACTATTGCCAAGCTGAACGACGTGAAGGAGAAGCCCATTGTGACAGAACAGGGCCAGAAACTAGCAAAGGAGATTGGTGCCTGCTGTTATGTTGAATGCTCAGCACTGACACAGAAAGGTCTGAAAACTGTGTTTGACGAGGCCATTATAGCCATTCTGGCTCCTAAGAAAGGCGCGCTCAAGCGAAGACTGGGCCCACGCTGCATCAACTGCTGCCTCATCACATGATACACCAGCTCAGGGGCGTCCAGGTGAAAGAAA

Function

symbol description
rhoq Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOQ (ras homolog family member Q).

GO:

id name namespace
GO:0032956 regulation of actin cytoskeleton organization biological_process

KEGG:

id description
K07194 RHOQ, TC10; Ras homolog gene family, member Q

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05198199_05217488.mRNA True 1047 mRNA 0.51 7 5198166 5217644

Neighbor

gene id symbol gene type direction distance location
CI01000063_05189361_05189645 CRIPT coding downstream 8521 5188403 ~ 5189645 (-)
CI01000063_05160162_05161742 SOCS5A coding downstream 34890 5158567 ~ 5163276 (-)
CI01000063_05085075_05095432 MSH2 coding downstream 102639 5084268 ~ 5095527 (-)
CI01000063_05070661_05081280 FBXO11A, FBXO11B, FBXO11 coding downstream 116886 5070423 ~ 5081280 (-)
CI01000063_05056169_05057789 FOXN2B, FOXN2 coding downstream 140311 5056169 ~ 5057855 (-)
CI01000063_05248902_05250362 NA coding upstream 31053 5248697 ~ 5250625 (-)
CI01000063_05252331_05253850 COX7A3 coding upstream 34250 5250005 ~ 5253940 (-)
CI01000063_05257128_05262520 KCNG3 coding upstream 39314 5256958 ~ 5263331 (-)
CI01000063_05304502_05306803 HCAR1-4 coding upstream 86795 5304439 ~ 5306803 (-)
CI01000063_05353701_05355458 ZFP36L2 coding upstream 135114 5352758 ~ 5356284 (-)
G265635 NA non-coding downstream 72683 5125257 ~ 5125483 (-)
G265564 NA non-coding downstream 85062 5109364 ~ 5113104 (-)
G265625 NA non-coding downstream 97180 5100356 ~ 5100986 (-)
G265620 NA non-coding downstream 171318 5026267 ~ 5026848 (-)
G265574 NA non-coding downstream 207566 4976411 ~ 4990600 (-)
G265653 NA non-coding upstream 4092 5221736 ~ 5226842 (-)
G265672 NA non-coding upstream 46498 5264142 ~ 5264343 (-)
G265665 NA non-coding upstream 46848 5264492 ~ 5281847 (-)
G265693 NA non-coding upstream 108488 5326132 ~ 5329568 (-)
G265705 NA non-coding upstream 132222 5349866 ~ 5350103 (-)
CI01000063_02725759_02726399 NA other downstream 2471631 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 2870447 2326741 ~ 2327309 (-)
CI01000063_02177769_02178239 NA other downstream 3019830 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 3528090 1669317 ~ 1672019 (-)
CI01000063_05616519_05617045 NA other upstream 329057 5615806 ~ 5617112 (-)
G265976 NA other upstream 1070514 6283058 ~ 6290946 (-)
G266797 NA other upstream 2071851 7289495 ~ 7290224 (-)
G266660 NA other upstream 2221441 7439085 ~ 7441435 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location