XLOC_001033 (si:dkeyp-75b4.7)


Basic Information

Item Value
gene id XLOC_001033
gene name si:dkeyp-75b4.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9972565 ~ 9980810 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001650
ATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGAGTTTTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCAGGGGTTAAACACATTTTCTGTCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatggtGGCACAGTGGGAAGtgctctcacctcacagcaagaagatcgctagtTCGATTCTCGACTggatctgttggcatttctgtgtggagtctgcatgttctcccagcgttcgcatgggtttcctccgggtgctccggtttcccccacaagtccaaagacatgcggtataggggaattggaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTTAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGagCAACCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCACCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTGCACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTTGGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTGATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGCAAAATTAATTAGCTGTAGGAACTTGTtttaaatggtgtgtgtgtgtgtgcgcgtgtgtgcgcgtgtgtgtgcgtgcgtgcgtgcgtgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagag
>TCONS_00001651
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGAGTTTTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCAGGGGTTAAACACATTTTCTGTCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatgaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTTAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGagCAACCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCACCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTGCACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTTGGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTGATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGCAAAATTAATTAGCTGTAG
>TCONS_00001652
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGAGTTTTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCAGGGGTTAAACACATTTTCTGTCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatggtaagtaactgCAAAACATTTATTACTACACATTACAGTAAATAGTTTCTTAACTGAATATGTTGCTCTGAAAAATCTAAATAGTCCCAAAAAaggaaatttactcactattcactCACCATGTTTccatggttccaaacctttgagtttcttttatctgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000070490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001650 False 993 mRNA 0.44 5 9972565 9980765
TCONS_00001651 False 730 lncRNA 0.39 4 9972696 9980810
TCONS_00001652 True 363 lncRNA 0.38 2 9979294 9980810

Neighbor

gene id symbol gene type direction distance location
XLOC_001032 pgap6 coding downstream 32071 9919909 ~ 9940494 (-)
XLOC_001031 NA coding downstream 53753 9916376 ~ 9918812 (-)
XLOC_001030 C1H7orf26 coding downstream 87239 9873295 ~ 9885326 (-)
XLOC_001029 mad1l1 coding downstream 114057 9739370 ~ 9858508 (-)
XLOC_001028 ugt5b2 coding downstream 319840 9629161 ~ 9652725 (-)
XLOC_001034 si:dkeyp-75b4.9 coding upstream 5865 9986675 ~ 9988840 (-)
XLOC_001035 rnf175 coding upstream 56634 10037444 ~ 10048514 (-)
XLOC_001036 fga coding upstream 82691 10063501 ~ 10071539 (-)
XLOC_001037 CR854964.1 coding upstream 289437 10270247 ~ 10272725 (-)
XLOC_001038 FRMD7 coding upstream 355871 10336681 ~ 10347307 (-)
XLOC_001024 NA non-coding downstream 550290 9420824 ~ 9422275 (-)
XLOC_001023 AL954703.1 non-coding downstream 650634 9308271 ~ 9321931 (-)
XLOC_001018 BX004779.1 non-coding downstream 774599 9197859 ~ 9197966 (-)
XLOC_001016 BX004779.2 non-coding downstream 809928 9157310 ~ 9162637 (-)
XLOC_001044 NA non-coding upstream 691042 10671852 ~ 10682149 (-)
XLOC_001045 NA non-coding upstream 758355 10739165 ~ 10740441 (-)
XLOC_001049 BX323090.1 non-coding upstream 889307 10870117 ~ 10870241 (-)
XLOC_001050 NA non-coding upstream 955914 10936724 ~ 10937815 (-)

Expression


Co-expression Network