G265564


Basic Information

Item Value
gene id G265564
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5109364 ~ 5113104 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU301406
GGGGAAGCAGTTTTTGGGTAAATTGTTAATTTTATTGGAAAACAAATATACAACTTGGAATGGATTCTGAGGCATGGCTGTGCCATAAGCAGTTACAAAAGAAAAGTGACTAATTAAAAAGCATAGTAAGAACAGAACAAATACAAAAAGATTAGAGTGTATGAGTACCTGGCGATAAACCCGTTAGTATTGAATTCAATGATGTTGCAATAGTGCAAAGCTGAGGACTTTCCCCATTTCTATTTATACGCAGTCCATTGTCCATTCAGAGTTGCACCTCCACATAAAATCAAGAGGAAAAAAAAAAAAAAAAAAAGAGTCATGCCAAAATTGTTGAAATGACGCCACACTGTCAGTCAGCTGGACCCTTGATGTCACCGCTCGTCAGGTGGGCAGGCAGACAGAGCAACAGAAGGGGAAAGGGGCCTGTGCGTAGTCAATATCTGTGCCTATATGTATCACCTGGTCCCATAACTGCTCCCTCTAACAGATTGTTTACAATGTCTAGGAGTTGGGGGAAGGCATGAGCACTCAAATCTTATAGTATACATGCAAATCCTTTGGACAGCAGGAGAGGATGGGGGAAAATTAAAATTAAACATTTTACAGAAATTAAAAACAAGAAAAGGCAGATAATTTTATACAAGAAATTCTGTACAAGGCCTTTACTTCGCTGTCATCATCTGTACAAATTCTGCAAAGAAAGACAAAAGGGGAAGTTTTAAGAGTCACTGCAAACAAACAAAACTCCAAACCAAGTGCAATTCAAAACGGACACAGATTATGTGAATTACAACACTCACCTTCATAATTGACCTGACCATCTCCATCAATGTCTGCTTCTCTAATCATTTCATCCACCTCCTCATCTGTTAATTTCTCCCCCAAGTTTGTCATCACATGGCGCAGCTCAGCAGCACTGATATATCCATTCCCATCCTGACAAAGACCTTATCAAAGACACGGAAAGCTTCTCTGATCTCCTCCTCGCTGTCGGTGTCCTTCATCTTTCTTGCCATCATCGTCAGGAACTCGGGAAAGTCTATTGTTCCATTTCCTGATTAAAGGGCAAAGTACACAGGCAGTTAAGTAACAGCACTATAAGTGAAGATAATGTTTTAATCGTGATAAAACACTTCAGGGAAATGGTTTCAAGTCATATGCAAATCTGACCCTACTCACAAGAGTTAACATCATGCTGATGGCTAATGTAGCAGCAAAAATGTGTTCTCACCATCTGCATCCACCTCATTGATCATATCCTGCAGCTCTGCCTCTGTAGGGTTCTGGCCAAGAGAGCGCATAACAGTGCCCAGCTCTTTCGTGGTGATGGTACCATCCCCATCTTTGTCAAATAGCGAGAACGCCTCTTTGAACTCTGTGAGAATGAACAGTAGAGACAAATCAGTCACATTTCTATAAACATGTCACTTTTCCACTTGAGCAAAAAACAAAAGGAACAGGTGAAGTACTTCTACTCCATGTCAAGCTTTTTAAATAATTACTTGTGGGCATTATGATTCCACATAGCTTAAGTAGATCCTTTTGTAGATCCTATATGCAATTTGTCTGATATGCTATTAGAAAAGGACAAATTCAAACTTTAAAACAAGTTCCCAAAGCTAAAAGTAGAATTTATTACATAATTGTCTATATACAAGACCAGGAACAACAAACGCCTTCATAGATAAATGATTAGGATGACAGGGTGACATGGAAGACACACAAACACCCCAGAGCCATGGCAACAACTGACCACTAGTACTAATGGTAAGGCCTTTAAGTTTAACCAGACCTGCCAATCACCAGTAGTTAAATGCACAGACATGCAAAACAAGATGGCCTCAAGTACCATCTAGACTCAATTTCTAAAGATAACATTTAAGGTCCAGCAAGAGTCAGCACTGTCACTGATAAGTTTAAATGAGGAGAATTGATCCTTGCAGGCATAGTCGGGATAAAACTAAAACTATAGTGACAAGTGAGACCAGTGCATGCATTTGCCCAGCAGTCTGAACACTAAAGGGCAATACAAAACTCCCCTCTGTGCCAACAATGTTCATTGAGTAGAGCTGATAAGACTATTTGATACTTCCTTTGATATGACATCAGACATTACAGATGCACGACCAGCTTTCCTCTGTTACACAGAACTGGCCCATTTCAAATTTTTTACTATAAACACGCAAAATAATACTAAAGCTTAAGGAAATGCATTAGGCTCTCTTATTTCTCTCTATCTCTTTATTGTACAGTATCTGTTATTGTTTAGGCTCACTTTTTTTAAAAAATAGAAACAGCAACATTTATGAGTCTGCACATTGAAGGAGGCGATAACTCATCCATGCCCACAGATTTGACTAAGATACCACCTTAAAAGGCAAATTATAGCAAACTAGAACAGCCAGGCTATTTCAAAACGCCACAAGCCAATGCAGAAACTCTGAAGGGGCGTGTAAGCATATCAAGTAAAGCACCTTACCGGCTATTTGCTCCTCTGTGAGTTGATCGGCCTAGGGAAGGGAAGAGATGCAAACAACCATATTAATAAATCATAAATCACTACGAATTCGTAGTGTTTTGGTACTCTGACATCAATGTCTAGCAACCCGTGTGAGACCGAACAAAGACCTCAGATTCCCTCCCAGCTAAATGTTACGACACCAACTCAAGAGAATAAAGTCTCAACATAGCGACGGTATTTAAGACACTCCTAACAACAGCAGTTCATCCACCCACCTGATTCATTGTATTTGGTGAACTACTCCCTCGTGGCACTATAGACAGTCATTTTAGATAGTAATTTAACCTTTTTAGTGTTGTAGTAGTCCTGTGATATAATGCTCGAGTAACCCAGTAAGACTACTGCAGGCTATCTCAACGAGCGAAACTGATCACTACGTTGTAACAATGCATGAAACTAAATGGATATATGAGCAAAACGTGTGATGATGCTTAACATTAAGATCCTTAAGATGGCTCAAGAATTAGAATACATAAATCCTCCACGACTTTATGCAAAAAAAAAGCACAATACATAAGTTTTTTTTTTGTTTGTTTGTTTAACCGGCTACTTTTCTTAACGCATCCCGTCATAGCCGGGCTGCAGACCACATGTGATGCTGCCCAGTCAACTTAACAACTAAACCAACATGGATACTTTTGGTTCAAACCCAGAACGTAAAGAAAATAAGCAAATTATGTTAAACGTTGTTTAAACCGTGACTTACTGAACCCTATTACCAAGTTTCGTAATAACTTGAAACTGAAAGTGAAGGGGCTCAAGCACACCCCTGAAGTTAGTAATACGTTACTTCCTTCACGGAGTTTCTTAGGTTTAGTCTGTGATAATTAAAAACTCGAAGCGAAATATGTCAAAAAATACATCAAAAACCGAAGAATGTGGAGCGGCGCGTATATTCCTTCATTCAGTCCATCCGCTGTGGTCGTAAATTTGGCGGCACATTTCTGTAAACGCCTGAAAAATATTATTTTTCTATTTCTTGTTTTCCTTACTTCCGCACAAATATATGTAAATAGTACATATCTTTTCATCAACGTATATCCATCATTCATTAGAAATATCGGTGTGCACTCACCATTTTCTCTTTTTCTCTGTCAGTCTCCCTCCGTCTCCGT
>TU301410
GGGGAAGCAGTTTTTGGGTAAATTGTTAATTTTATTGGAAAACAAATATACAACTTGGAATGGATTCTGAGGCATGGCTGTGCCATAAGCAGTTACAAAAGAAAAGTGACTAATTAAAAAGCATAGTAAGAACAGAACAAATACAAAAAGATTAGAGTGTATGAGTACCTGGCGATAAACCCGTTAGTATTGAATTCAATGATGTTGCAATAGTGCAAAGCTGAGGACTTTCCCCATTTCTATTTATACGCAGTCCATTGTCCATTCAGAGTTGCACCTCCACATAAAATCAAGAGGAAAAAAAAAAAAAAAAAAAGAGTCATGCCAAAATTGTTGAAATGACGCCACACTGTCAGTCAGCTGGACCCTTGATGTCACCGCTCGTCAGGTGGGCAGGCAGACAGAGCAACAGAAGGGGAAAGGGGCCTGTGCGTAGTCAATATCTGTGCCTATATGTATCACCTGGTCCCATAACTGCTCCCTCTAACAGATTGTTTACAATGTCTAGGAGTTGGGGGAAGGCATGAGCACTCAAATCTTATAGTATACATGCAAATCCTTTGGACAGCAGGAGAGGATGGGGGAAAATTAAAATTAAACATTTTACAGAAATTAAAAACAAGAAAAGGCAGATAATTTTATACAAGAAATTCTGTACAAGGCCTTTACTTCGCTGTCATCATCTGTACAAATTCTGCAAAGAAAGACAAAAGGGGAAGTTTTAAGAGTCACTGCAAACAAACAAAACTCCAAACCAAGTGCAATTCAAAACGGACACAGATTATGTGAATTACAACACTCACCTTCATAATTGACCTGACCATCTCCATCAATGTCTGCTTCTCTAATCATTTCATCCACCTCCTCATCTGTTAATTTCTCCCCCAAGTTTGTCATCACATGGCGCAGCTCAGCAGCACTGATATATCCATTCCCATCCTGACAAAGACCAGTGAACAACGATCCATCCAAATTATTTTACACCTAGGAATGTTACCAGCAATGCCTTAATAGCAGGTTAAATGAATTCAACAGTTCTTCAGAAGCCTTACCTTATCAAAGACACGGAAAGCTTCTCTGATCTCCTCCTCGCTGTCGGTGTCCTTCATCTTTCTTGCCATCATCGTCAGGAACTCGGGAAAGTCTATTGTTCCATCCATCTGCATCCACCTCATTGATCATATCCTGCAGCTCTGCCTCTGTAGGGTTCTGGCCAAGAGAGCGCATAACAGTGCCCAGCTCTTTCGTGGTGATGGTACCATCCCCATCTTTGTCAAATAGCGAGAACGCCTCTTTGAACTCTGTGAGAATGAACAGTAGAGACAAATCAGTCACATTTCTATAAACATGTCACTTTTCCACTTGAGCAAAAAACAAAAGGAACAGGTGAAGTACTTCTACTCCATGTCAAGCTTTTTAAATAATTACTTGTGGGCATTATGATTCCACATAGCTTAAGTAGATCCTTTTGTAGATCCTATATGCAATTTGTCTGATATGCTATTAGAAAAGGACAAATTCAAACTTTAAAACAAGTTCCCAAAGCTAAAAGTAGAATTTATTACATAATTGTCTATATACAAGACCAGGAACAACAAACGCCTTCATAGATAAATGATTAGGATGACAGGGTGACATGGAAGACACACAAACACCCCAGAGCCATGGCAACAACTGACCACTAGTACTAATGGTAAGGCCTTTAAGTTTAACCAGACCTGCCAATCACCAGTAGTTAAATGCACAGACATGCAAAACAAGATGGCCTCAAGTACCATCTAGACTCAATTTCTAAAGATAACATTTAAGGTCCAGCAAGAGTCAGCACTGTCACTGATAAGTTTAAATGAGGAGAATTGATCCTTGCAGGCATAGTCGGGATAAAACTAAAACTATAGTGACAAGTGAGACCAGTGCATGCATTTGCCCAGCAGTCTGAACACTAAAGGGCAATACAAAACTCCCCTCTGTGCCAACAATGTTCATTGAGTAGAGCTGATAAGACTATTTGATACTTCCTTTGATATGACATCAGACATTACAGATGCACGACCAGCTTTCCTCTGTTACACAGAACTGGCCCATTTCAAATTTTTTACTATAAACACGCAAAATAATACTAAAGCTTAAGGAAATGCATTAGGCTCTCTTATTTCTCTCTATCTCTTTATTGTACAGTATCTGTTATTGTTTAGGCTCACTTTTTTTAAAAAATAGAAACAGCAACATTTATGAGTCTGCACATTGAAGGAGGCGATAACTCATCCATGCCCACAGATTTGACTAAGATACCACCTTAAAAGGCAAATTATAGCAAACTAGAACAGCCAGGCTATTTCAAAACGCCACAAGCCAATGCAGAAACTCTGAAGGGGCGTGTAAGCATATCAAGTAAAGCACCTTACCGGCTATTTGCTCCTCTGTGAGTTGATCGGCCTAGGGAAGGGAAGAGATGCAAACAACCATATTAATAAATCATAAATCACTACGAATTCGTAGTGTTTTGGTACTCTGACATCAATGTCTAGCAACCCGTGTGAGACCGAACAAAGACCTCAGATTCCCTCCCAGCTAAATGTTACGACACCAACTCAAGAGAATAAAGTCTCAACATAGCGACGGTATTTAAGACACTCCTAACAACAGCAGTTCATCCACCCACCTGATTCATTGTATTTGGTGAACTACTCCCTCGTGGCACTATAGACAGTCATTTTAGATAGTAATTTAACCTTTTTAGTGTTGTAGTAGTCCTGTGATATAATGCTCGAGTAACCCAGTAAGACTACTGCAGGCTATCTCAACGAGCGAAACTGATCACTACGTTGTAACAATGCATGAAACTAAATGGATATATGAGCAAAACGTGTGATGATGCTTAACATTAAGATCCTTAAGATGGCTCAAGAATTAGAATACATAAATCCTCCACGACTTTATGCAAAAAAAAAGCACAATACATAAGTTTTTTTTTTGTTTGTTTGTTTAACCGGCTACTTTTCTTAACGCATCCCGTCATAGCCGGGCTGCAGACCACATGTGATGCTGCCCAGTCAACTTAACAACTAAACCAACATGGATACTTTTGGTTCAAACCCAGAACGTAAAGAAAATAAGCAAATTATGTTAAACGTTGTTTAAACCGTGACTTACTGAACCCTATTACCAAGTTTCGTAATAACTTGAAACTGAAAGTGAAGGGGCTCAAGCACACCCCTGAAGTTAGTAATACGTTACTTCCTTCACGGAGTTTCTTAGGTTTAGTCTGTGATAATTAAAAACTCGAAGCGAAATATGTCAAAAAATACATCAAAAACCGAAGAATGTGGAGCGGCGCGTATATTCCTTCATTCAGTCCATCCGCTGTGGTCGTAAATTTGGCGGCACATTTCTGTAAACGCCTGAAAAATATTATTTTTCTATTTCTTGTTTTCCTTACTTCCGCACAAATATATGTAAATAGTACATATCTTTTCATCAACGTATATCCATCATTCATTAGAAATATCGGTGTGCACTCACCATTTTCTCTTTTTCTCTGTCAGTCTCCCTCCGTCTCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301406 False 3639 lncRNA 0.39 2 5109364 5113104
TU301410 True 3562 lncRNA 0.39 2 5109364 5113104

Neighbor

gene id symbol gene type direction distance location
CI01000063_05085075_05095432 MSH2 coding downstream 13837 5084268 ~ 5095527 (-)
CI01000063_05070661_05081280 FBXO11A, FBXO11B, FBXO11 coding downstream 28084 5070423 ~ 5081280 (-)
CI01000063_05056169_05057789 FOXN2B, FOXN2 coding downstream 51509 5056169 ~ 5057855 (-)
CI01000063_04834309_04848552 NA coding downstream 260644 4834047 ~ 4848720 (-)
CI01000063_04667829_04669237 CHAC2 coding downstream 440127 4667166 ~ 4669237 (-)
CI01000063_05160162_05161742 SOCS5A coding upstream 45463 5158567 ~ 5163276 (-)
CI01000063_05189361_05189645 CRIPT coding upstream 75391 5188403 ~ 5189645 (-)
CI01000063_05198199_05217488 RHOQ coding upstream 85062 5198166 ~ 5217644 (-)
CI01000063_05248902_05250362 NA coding upstream 135593 5248697 ~ 5250625 (-)
CI01000063_05252331_05253850 COX7A3 coding upstream 138790 5250005 ~ 5253940 (-)
G265625 NA non-coding downstream 8378 5100356 ~ 5100986 (-)
G265620 NA non-coding downstream 82516 5026267 ~ 5026848 (-)
G265574 NA non-coding downstream 118764 4976411 ~ 4990600 (-)
G265610 NA non-coding downstream 151769 4956591 ~ 4957595 (-)
G265504 NA non-coding downstream 192528 4896943 ~ 4916836 (-)
G265635 NA non-coding upstream 12153 5125257 ~ 5125483 (-)
G265653 NA non-coding upstream 108632 5221736 ~ 5226842 (-)
G265672 NA non-coding upstream 151038 5264142 ~ 5264343 (-)
G265665 NA non-coding upstream 151388 5264492 ~ 5281847 (-)
G265693 NA non-coding upstream 213028 5326132 ~ 5329568 (-)
CI01000063_02725759_02726399 NA other downstream 2382829 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 2781645 2326741 ~ 2327309 (-)
CI01000063_02177769_02178239 NA other downstream 2931028 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 3439288 1669317 ~ 1672019 (-)
G265567 NA other upstream 49390 5183279 ~ 5183287 (-)
CI01000063_05616519_05617045 NA other upstream 433597 5615806 ~ 5617112 (-)
G265976 NA other upstream 1175054 6283058 ~ 6290946 (-)
G266797 NA other upstream 2176391 7289495 ~ 7290224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 misc NC_035902.1 CM008305.1 20621569 ~ 20690422 (-)