G267097


Basic Information

Item Value
gene id G267097
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 204269 ~ 212348 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU303146
TTCAGAGTTTCAGTCAAAGAATCGACCTGCTGGTTGAGGTCTGAAATCTTTTGTTGCATCTTTTTTTCCCGGCACTTACAGGCAGCATTGCTGCACTTCTCCTCCTCCTCCTCTTCAAAATGCACAATAGGATCATCCATCCTGGGTGTTCTTATTCTAGGTCCAGCGTGGAGACCATAGGCACCTCCAGGTTAGGAGGTGCCCTCAGTGCACTTGTTACGAGTCCCGGGCGTGGAACACGTAAACAGATTACAAAACCCCTGAATTATCAGGAGAAGTAAACACAAGAAAAGATCAGCGGCTTTCCTCAAACGCAGCTTGTAGCGTCTCATTATTAACATCATATCATTTTGACTTTATAATTATCAATGTCACAAAATACACACTATTCACACATCTGTTGTCTTAACTGTTATATTAGTATCTTTTAAAATGAAACTGTTTTACTGTACAAAATGATCACCGTCACTCTCATAACACATATACACTACTCTAAGTCTGAACAAATATACAAATATACACTTCTGAGTCATTTTTATATTGGTAAATTAGCGCATACTGAAATAAAATTTATCATTTACATGTGAATTGACTACAATCACAACAATCAACCGTTTTACCCTGTAATTTTCACATTTAACACAAACAAGTTATTAGTTTTAAACACATAGGAAATGTGAACTGACATGTCTTATAATGGCAATGGCACATATTTTCATTTTTTTTATGAATATATACCTGAATTATCAGGAGAAGTAAACACAAGAAAAGATCAGCGGCTTTCCTCAAACGCAGCTTGTAGCGTCTGAAGTAAACACAACGCGCATCACCATAGCAACCCACAACGGACTCCCTCTAGTGGCAACAGTTGTATTTTCTTTTAAAACTTCAGTCTTAAGTGGTGATAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU303146 True 908 lncRNA 0.37 2 204269 212348

Neighbor

gene id symbol gene type direction distance location
CI01000065_00120723_00133111 MBOAT1 coding downstream 71158 120406 ~ 133111 (-)
CI01000065_00097164_00097583 NA coding downstream 106679 96904 ~ 97590 (-)
CI01000065_00076766_00091631 NA coding downstream 112638 76685 ~ 91631 (-)
CI01000065_00050903_00055774 NA coding downstream 148495 50386 ~ 55774 (-)
CI01000065_00036512_00040370 NA coding downstream 163899 35848 ~ 40770 (-)
CI01000065_00253168_00255665 NA coding upstream 40343 252691 ~ 255710 (-)
CI01000065_00330696_00340165 NA coding upstream 118244 330592 ~ 340772 (-)
CI01000065_00444905_00447425 NA coding upstream 232332 444680 ~ 447425 (-)
CI01000065_00563411_00579174 MBPB, MBP coding upstream 350500 562848 ~ 580083 (-)
CI01000065_00622545_00624625 NA coding upstream 409775 622123 ~ 624657 (-)
G267056 NA non-coding downstream 61182 142508 ~ 143087 (-)
G267047 NA non-coding downstream 92458 111111 ~ 111811 (-)
G267041 NA non-coding downstream 111271 92762 ~ 92998 (-)
G267039 NA non-coding downstream 130407 73518 ~ 73862 (-)
G267036 NA non-coding downstream 135248 68816 ~ 69021 (-)
G267106 NA non-coding upstream 6327 218675 ~ 218909 (-)
G267129 NA non-coding upstream 49014 261362 ~ 261598 (-)
G267136 NA non-coding upstream 54810 267158 ~ 267388 (-)
G267140 NA non-coding upstream 58263 270611 ~ 270859 (-)
G267159 NA non-coding upstream 71524 283872 ~ 284099 (-)
G267024 NA other downstream 158182 43039 ~ 46087 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other upstream 570349 782697 ~ 793467 (-)
G269348 NA other upstream 3096095 3304357 ~ 3312480 (-)
G269679 NA other upstream 3561532 3773880 ~ 3774294 (-)

Expression


Co-expression Network