XLOC_001041 (zgc:174945)


Basic Information

Item Value
gene id XLOC_001041
gene name zgc:174945
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10636064 ~ 10640748 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001670
TGCAAGTGTCAGTCTAACCGATACATCATACTGCATCTGCAGTGCTGAAAGGAAGTCTTGATGTGGGGGAGCTTCAGAAACAATGCAGGCAGCCATTTTCACACTAGCCATTTCCTCAGACTGACTGAAACATGCAGATCTCTTACCCGACCTCAGCGTTCCTCATTGCTTTTCTCTGCAGTCTGCTGTCCTCCCTTTCAGGCCTGATTGTGAGATATCCACGTGAACCGGTGGAGGAGATGGAAGGCCGTGTGCTGTCTTTCAAGTGCAGATTGGAGTACAAGACAGAGAATTGTGATATTTCTGCCAAATGGTGGCGTGTAGAAAGCGAGACAATTTCTGAGCCCATTACAGACACAAACAGATTTCTAATCACAGttaatgaaacaaaaaaagatgAACAAAGGCACAGGGACATTGTCTTGACATTCAAGTCCTTGAGTATTGCAGATCGGGGCTATTACCAGTGTAATGCCAAATGTCTCAACAGTGGAACTGTCGGAAAAGGCCATGTCCTGACCCTTAATGTTAAAGCAGATCCACACAAAGGTCTGAAGGCCTCAGCATGGAGTGGAAAGTTAAAGACTGACGTGACTGTGCTTGTGCTCAGCATTGTGTTATTTGTATGGTATAATTAaatgacattgtgtttttaagGATTGATCAATAGCTATGAGATATACTGTATTGTGGCCAATATATATATCTTCATCTTTTATTCTGACATACTACATTGTGAATTAAGGATGTCAATTTCTAAAAATTCCCAAGGTTAATCTTTATTTAAATGAACAGTTAATTGATAAATTGCCAACctaaacaatgcaaaatgttaatGGGCTAGGATGTAAGCCCATTAATGGGGTTGCATTTTAAATTTAAGCTAATCTTTTTAAAGTTTACAAAAAGAAAAGTGAATCCCAAGTGAAAATTAGGTAcgtttccatcaagttgttagtGTGGCTtattgtagtattggtaacctagcaaccaacagtaaacaaaacaagtgtaaccccgctggtcctacaccacccaacccattCCGAGCTGGGATTGAACAGGAAActcagcacttcactagctggcctctgttactcGCACCCTCCtctccgggtcacggcaccaatgtaaccctgccagtTCTACACCATCCAACCTACTCCAAGCTAGGATTAAACCGGTGACTCTCCATATGGGAgtctgttgctctaacaaggaggctaaaatccatggcctctagcatctgttgctTGAGCACCTTTAggggtcagaggagtgaggtttacctgcacagcacttcactagctggcctctgctacacagGCATAATGGAGACAGCTGATTAGTCACGTGGGTGTAATGTTTGCTACATCATAGTTTATCTCTCATTTCTTACATTAATCCCCTTTCAGTTCAAAACCATTTCAAGCAAGTGTAAAAACATATTTTGCTAACTGAGGGATTTGTATTTGACTTTGTCATTTCCATCATTCATAACTCATGCAATACTTGGAAATACAGGGAAATGCTGGAAACACTGTTGATGAAAACCCTGGCAGGACAGGATGCATAAAGAACACATAAAATGCAAACATTCTCACCCAGCTCTAAATTAAATTGTAACtgtcaattaaaatgtaaatttacggTAAATATAACGTTAGTCGGATTGTAAAAACTCAGTCAGTCATTGCTAATATATTAGAATGATCTAATTAGCAAATCGAATGGCTAACATACATTATGTGTCAATAGCGCTGTCATAGATGTAAACACATGGCAACTGGTGCATGTTTACATCCATCTGAGCAAATAGTTGTGGTTatatgcacaatatatatatgaacaaatatacggtttatttataaagatagtgcctaTTTATCAGTTAGTTGGAGAAGTGAACACCAGGATGCCAGTTTAGTGCTTGTGAATAACTCAAGAGCAGCCTCTCCTCTGACACTTCTTCTGGAAACCACAGCTGGCACTGATGCAGGTTTTTTATGGTTAATCATGatatttaacttgttttcagTATATATACCTGTCAATGTTTAGTCTCAATTTCCTATTTCTTTCagagcaaacaagaaaaaaactgaaGTCTAAAATATTCATATCATTTGATATCATTTGTAATGCTTTTGTacgtttttttaatcttttataataGTTGTTGCTGctgtaaataaatactgtaaatagtaTTGTTCAgtacataaatgtatataatatgcataataataatgtttaataaatttattttgtaatgtaaacaCTTTTGTGTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-80 No description available

Ensembl:

ensembl_id ENSDARG00000062057

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001670 True 2291 mRNA 0.38 3 10636064 10640748

Neighbor

gene id symbol gene type direction distance location
XLOC_001040 trpc5a coding downstream 15605 10486093 ~ 10620459 (-)
XLOC_001039 cnpy3 coding downstream 162434 10462692 ~ 10473630 (-)
XLOC_001038 FRMD7 coding downstream 288757 10336681 ~ 10347307 (-)
XLOC_001037 CR854964.1 coding downstream 363339 10270247 ~ 10272725 (-)
XLOC_001036 fga coding downstream 564525 10063501 ~ 10071539 (-)
XLOC_001042 si:dkey-31e10.1 coding upstream 1574 10642322 ~ 10647484 (-)
XLOC_001043 si:dkey-31e10.5 coding upstream 26699 10667447 ~ 10669436 (-)
XLOC_001044 NA coding upstream 31104 10671852 ~ 10682149 (-)
XLOC_001045 NA coding upstream 98417 10739165 ~ 10740441 (-)
XLOC_001046 si:ch73-222h13.1 coding upstream 142922 10783670 ~ 10806625 (-)
XLOC_001031 NA non-coding downstream 717252 9916376 ~ 9918812 (-)
XLOC_001024 NA non-coding downstream 1213789 9420824 ~ 9422275 (-)
XLOC_001023 AL954703.1 non-coding downstream 1314133 9308271 ~ 9321931 (-)
XLOC_001018 BX004779.1 non-coding downstream 1438098 9197859 ~ 9197966 (-)
XLOC_001049 BX323090.1 non-coding upstream 229369 10870117 ~ 10870241 (-)
XLOC_001050 NA non-coding upstream 295976 10936724 ~ 10937815 (-)
XLOC_001051 BX004756.1 non-coding upstream 421776 11062524 ~ 11062647 (-)

Expression


Co-expression Network