XLOC_010427


Basic Information

Item Value
gene id XLOC_010427
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6605385 ~ 6635296 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021783
AGAGAGGCCGTGAATGAGGAACTTTCCTCAGATTGCTGCTATTCTCCAGTTTATTGCATCCTGTCACTGGTAGTTTCAGCTGATGTCCAGTACAGCAGTCCTGCTCAGGCCAGTAAAATAGCTGCTTAACAATGAACAACGGAGGGGGGGGAAACAACGCAGAGATTCTGAATGATCTTTCAGTCAACACAAACTCAAGAAAATATCTCATAGAGCAGCATTTCCCAATGCGAGAGATGCAAAGACCTGGATTGGATGGGTTAAGAGTGAGACATCAAAACGTATACTGTTGGTGTGcttctaggaacagggttgggaaacacttctctagtgtataattattattgctgttgagAATCACCTAATGAACACCTTCCTTTCACTGCAGCCATGAATGTCAGTCTTAATTTCCAGCCACAGTAGACAAAATTACATAGCATGTAACCTGCCATcatctaaaaaagaaaagaaaaagcagGGGGGGGGGTACTCCTATTGGCtgcttacttttatttttatgctctttcaatttttaaatgatctcaatacaataaaaaataacaaaaaatcccAATAGATTTGTAaatggttttgtgtgtgtatgctcTTTTGTCTTCTCTTTGTTCCGCTCAGCTGCACAGGAAAAAGAGGCTTGAAGCCGAGGAGCAAAGGAGCCCAAACAGAAATGATTATTGATTTAATCACATAATCAGCAGCCAGCACCTCAGGCCCAGATAGTAAATCCATAATAGCCTCTCCACGTAACCAACTCAACAAATTTACCATCAAAGCCATCCGTGCACAAACTCTAAACACTGAAGCCAAGGGTCACCTTCAGTGGCTGAGAAAATATTGACGTACTGGGTTTCATCATGTTCTGCACTTATCAAAAGCAACTGCAATCTTACACAAGAATCACCTATGCGATTCATATTAGAATATAAGAAAACGAGAGATTAAATCGGTTGTAAGAAATATCGCACAATGACTGTCATTCACCTGCATTCTGGCATGGAGGAGACTTTGACTATTGGCACATTTTCCTACTATTCAGAattttatgcatatataaatgCAATTATTATTTCAATGTCAATAGATATATAACGTATACTATAGAAGTGCATTTGTTGAAAGAATACCCAAGTAGAGAAAGCCTTCTTGACAACCACTTGAGCAGACCCTTCACACACTGCTACCTTGAAAACAGGTGCAAAGTAAGATCGTCATTTCTCATGCTCTTTCCAATCTACTAATAATCAACTTTTTCTTTGTCACTAAACTACTATTTACAATTTAGAATAGAAAAATTAGCTCATGAGTTGAACTCTGGGTGTTGAACTAAAATAACAGGAGAAATGAACTGAatttaggtaaaaaaataaaaaaatagtaaataaataaaaaataaacaaac
>TCONS_00022101
AAATCACCTCTAACgcccagaggaggaggagggtcaATTGTTTTCTTTTCTCTGTGGGGTTTTTCCTCTGTACTTCATTTTAGCATGATTTTACTCTGAACTTCGGACGGTTTATGTATATTCCCAACAGTTAGTGGAGTGAGAGGAAAGTGAGTTGTACGGGCTGCTCCGGTTCAGAATAACTTTTCTTCTTTGTAAAGGTTCGTTTCGTCCATTAGTTGATACAATGAACGATTAACACAGTCATCTCtgagcaaaaaagaaaaagaaaagcacactTCGTCCTCGGATGTTACCAATTTTTCCAGTGTCAGCAAACTGAAGTTTACTACGGTAAGCCTGAAGTAAGGTAGCCTAGATGTCTTTTAATTAACAATACTTTGCTTCACCAATTTAAATGTAAGATAAAGTGTTCGAATCATGAAAAGTTCATCAGTTTAAATGTGTCCCGTCGTATATCACTCCTTTCAGGATTCTGCGGTGGTTTTTGTCTTCCTCAAGCCCGTTTAAGGACTCTCGCTCCAGGCCTACAAATCAGCTCGAATCGTTAAAAGAAGGTTCGCGAAACAAACCGGCGTTTCATCTGAGGTTTTCAGTTGTGTAGAAGCTGTGATTGCATCAGCAGATCAGGTGG
>TCONS_00022102
CGTGTTCAGGAAGCAGCTCCAGAAGTGTCGGGTCCTCGTCCGATCTCAGCTGCTGTGGCTTCGCTTGCTTCCGACGGGACATTCTTCAGCTGCGATATCTTCCTCATTCACAAACATCAGCAGAGATccgctgaaaaaaaatcttctcaaaAAGTCAAGCTGTAAAATAGCGCAGATGATCTTCTGTTATGTGGATGTATCATTATGATAGTGAATGATACTTTGAATTGGCAGAGCTCCAGTGGGCACACTGATATGGAAATGAGGGACGGACTCCGCAATTTACTACTTCACCTTCAAACATCACCATCCACCCAAAATCACCTCTAACgcccagaggaggaggagggtcaATTGTTTTCTTTTCTCTGTGGGGTTTTTCCTCTGTACTTCATTTTAGCATGATTTTACTCTGAACTTCGGACGGTTTATGTATATTCCCAACAGTTAGTGGAGTGAGAGGAAAGTGAGTTGTACGGGCTGCTCCGGTTCAGAATAACTTTTCTTCTTTGTAAAGGTTCGTTTCGTCCATTAGTTGATACAATGAACGATTAACACAGTCATCTCtgagcaaaaaagaaaaagaaaagcacactTCGTCCTCGGATGTTACCAATTTTTCCAGTGTCAGCAAACTGAAGTTTACTACGGATTCTGCGGTGGTTTTTGTCTTCCTCAAGCCCGTTTAAGGACTCTCGCTCCAGGCCTACAAATCAGCTCGAATCGTTAAAAGAAGGTTCGCGAAACAAACCGGCGTTTCATCTGAGGTTTTCAGGTGTGCATTCGGCTGGGTGATGATGCGGCAGCCGCAGAAGTTTGATAGTTCTCGGTGATGGCGCTGGAGaggtgtgtgtccgtgtgtgagACTGTGTGTCGAGTGTGAGGGATTTGCCGAAGGTTTGAACTGAGCCCATTGCGGGGAGCGACCGCTAGGATGTAGCAGGACACACCAATTCACCTCAGCCCGTCATCTGATGCTCTGACTGCTTGAAATTGACCTGATAAAATTACTCAGTGTATCTTATTAGGAGAATTACATTTGGTCTATGAATATGCGCATGGAAAACATGCGATAAcgatttaaattctttaaaaaatcaatTAGACAAAAGAAGAACACATGTTCATTTGTATGAGGATTATAATTAGTTTACAATTTAGTTTTTCCTTCATTATTGATATAGGAACTTTATTTGTTGACCCTTTTATTTATGGTTTGACCCTTTTATTTATGGTAGGCTATATGCATATAAttgttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgttatgaCGTAGGACTACGCATCGGACAAAAAGTTTCTTTTAGAGCAGGTttatcacacttttttttcttctaaccTTTCACCTTTCCAAAAGTTGTGTTCAAAAACATTCAATCTTCTATTAATACATGCAGAAGACAAAATCAACCGCTGATAATTGCAGGAGTGTAGCTCAGGTCCTGTATCGATCGGCGTGTCCTGCTATAGAGAGATAAGAACCCTCACTCTTTACTGCAATATCATTTCTTTTGACCTATCTGCTCGCTACAGACTTATGATGAATAGCCGAAGCAGCTAAAGTCTTTTATCACGAGAGTATCCCCTTGATATAAAATTGATTCTTTATAACTAACTTGACACACAGAAACCAAAACGCCCACTTTGCTATTCTCAACAATATCAATATCTTACTGCAGGTCTTCTCTTTATGTATAGGACTATGATGATGAAAGTAGACAAAATCTTCATTAAATCTTTATTTAGTCaccataaataataatttttaataattttttttccaaaacaagaaaaaatacttATCAGATATCATGTTTAACGTGTTACACATTTTCTATATAGATGTAAAACAGCGTTTGAGGCAGCAGAAATTACCTTAAAAATGTGTGAGCAGTGTGAAAGTCAGGGAGGCGAGGGGATTGAATGGGGAGGGTGTGCTCTCAGTATTCAGCGGTCTAGACGAACAGCAAATGTGCTTTAGCCTAACGAATCCGCTTAAAGCTCTACGAACTGTTCGTAAAGGCAGGCAAAGCACCGATACGGTGTTGTTTATTGTATTCGTTGATTCTTCAGCGATGGATGTGATGAGCTCAGAAGTCAAAGAGAACAGAAGGCAAATCTGAACCGCGACTTGAATCACAGCGACACTTGCCAGGATAGAAGACAGAGAGGCCGTGAATGAGGAACTTTCCTCAGATTGCTGCTATTCTCCAGTTTATTGCATCCTGTCACTGGTAGTTTCAGCTGATGTCCAGTACAGCAGTCCTGCTCAGGCCAGTAAAATAGCTGCTTAACAATGAACAACGGAGGGGGGGGAAACAACGCAGAGTAAGACAGAGCACAcaatatattgcatttttttaactCACTACATTCTTTGCTCTGTGAAACTGTTAAATAACtgtgttattaaaaacaaacttaagtATTCTTTAATGATGCATTTTTCTGCACATTTAATGAAAGAAATCACCCAAACGGAAT
>TCONS_00020488
CGTGTTCAGGAAGCAGCTCCAGAAGTGTCGGGTCCTCGTCCGATCTCAGCTGCTGTGGCTTCGCTTGCTTCCGACGGGACATTCTTCAGCTGCGATATCTTCCTCATTCACAAACATCAGCAGAGATccgctgaaaaaaaatcttctcaaaAAGTCAAGCTGTAAAATAGCGCAGATGATCTTCTGTTATGTGGATGTATCATTATGATAGTGAATGATACTTTGAATTGGCAGAGCTCCAGTGGGCACACTGATATGGAAATGAGGGACGGACTCCGCAATTTACTACTTCACCTTCAAACATCACCATCCACCCAAAATCACCTCTAACgcccagaggaggaggagggtcaATTGTTTTCTTTTCTCTGTGGGGTTTTTCCTCTGTACTTCATTTTAGCATGATTTTACTCTGAACTTCGGACGGTTTATGTATATTCCCAACAGTTAGTGGAGTGAGAGGAAAGTGAGTTGTACGGGCTGCTCCGGTTCAGAATAACTTTTCTTCTTTGTAAAGGTTCGTTTCGTCCATTAGTTGATACAATGAACGATTAACACAGTCATCTCtgagcaaaaaagaaaaagaaaagcacactTCGTCCTCGGATGTTACCAATTTTTCCAGTGTCAGCAAACTGAAGTTTACTACGGATTCTGCGGTGGTTTTTGTCTTCCTCAAGCCCGTTTAAGGACTCTCGCTCCAGGCCTACAAATCAGCTCGAATCGTTAAAAGAAGGTTCGCGAAACAAACCGGCGTTTCATCTGAGGTTTTCAGGTGTGCATTCGGCTGGGTGATGATGCGGCAGCCGCAGAAGTTTGATAGTTCTCGGTGATGGCGCTGGAGaggtgtgtgtccgtgtgtgagACTGTGTGTCGAGTGTGAGGGATTTGCCGAAGGTTTGAACTGAGCCCATTGCGGGGAGCGACCGCTAGGATGTAGCAGGACACACCAATTCACCTCAGCCCGTCATCTGATGCTCTGACTGCTTGAAATTGACCTGATAAAATTACTCAGTGTATCTTATTAGGAGAATTACATTTGGTCTATGAATA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0021703 locus ceruleus development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021783 False 1417 lncRNA 0.37 2 6605385 6626166
TCONS_00022101 False 634 lncRNA 0.41 2 6620949 6634979
TCONS_00022102 False 2516 lncRNA 0.40 3 6625848 6635296
TCONS_00020488 True 1053 lncRNA 0.45 2 6634106 6635296

Neighbor

gene id symbol gene type direction distance location
XLOC_010426 NA coding downstream 14215 6588022 ~ 6591170 (-)
XLOC_010425 NA coding downstream 48884 6512346 ~ 6556501 (-)
XLOC_010424 NA coding downstream 121158 6476016 ~ 6484227 (-)
XLOC_010423 mboat1 coding downstream 180567 6395311 ~ 6424818 (-)
XLOC_010422 ndufb9 coding downstream 214106 6386941 ~ 6391279 (-)
XLOC_010428 NA coding upstream 12734 6648030 ~ 6651719 (-)
XLOC_010429 mbpb coding upstream 168174 6803470 ~ 6849781 (-)
XLOC_010430 AL845419.1 coding upstream 193256 6828552 ~ 6829635 (-)
XLOC_010431 pmvk coding upstream 301890 6937186 ~ 6944927 (-)
XLOC_010432 si:ch73-341k19.1 coding upstream 566786 7202082 ~ 7239508 (-)
XLOC_010626 CR392024.2 misc upstream 14259816 20895112 ~ 20895175 (-)
XLOC_010421 NA non-coding downstream 218743 6383530 ~ 6386642 (-)
XLOC_010419 NA non-coding downstream 253695 6291173 ~ 6351690 (-)
XLOC_010436 NA non-coding upstream 872805 7508101 ~ 7621115 (-)
XLOC_010438 BX511173.1 non-coding upstream 1058585 7693881 ~ 7696216 (-)
XLOC_010441 NA non-coding upstream 1198923 7834219 ~ 7881277 (-)

Expression


Co-expression Network