XLOC_010441


Basic Information

Item Value
gene id XLOC_010441
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7834219 ~ 7881277 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022114
CAAAACACCCCTCCCATGTGTCTCTCTACTCTCTGTGCCAGGGTGAGGCTACCGATCTCATTCTCctggagtgtgtgagtgtgtgagtggaGTTAGGAGGCGAGGATGGAGAAAGAGGCGGTTAGTGGAGAGGAGCGAGAGGAAGGATGCatgaaagagagtgtgtgtgagatcaGAGCTGGGGAAGCTCGTGGAAGCGACAGGACACAATCAGCACCACTGTCTGCAAAGATCATGAGGGTTTCCGAAGGCCGTCAGAATGGCTCTTCCTCCATGATGTTACAAGAGACTGAGTGCATCCTCAAATGTCAGGTGGACCTGCAGAGATGGATGATGAGGATGACCTGAGACTGTTGTCTCTGATGGAGCAGGACAGCTGGTGTTGTGAATCAGGCCGCCGTGGTGAAAGGGTACGGCTTCTTCACAACACCAGGGTCTCACTTCATCACACACGGCAACACCATTCACATACTGTCACACAAACACCAGTGTCCAGTGACCCAGCCAGAGGATGCAGATGTCTGTTCGCCGATCACTAACATAAGTCAGAACTATATTCTGTCAATCAAAAAAAtaagtttgctgtttgttcaaaatacgtatttaaaatgagctgaaacaacacaattcttgagttttcttggagggacaacttaattgttttatttttcatcaaCATAAAATTGTAACCATTAAGTAACTTATTTGATTTGCGTTGAAATGAaatgaagggattgtgtggaacccagcatttttacagtactgtaaaaaatgatttattgttttgacTTACCCGGGTGAGTTACCCGGTTGCCTTAAAATTGAGtttattgtaattataaatgtgAGTTATAATAACTTGAGTGattttgttgtttcaactaattttgctaatattttgtGTTGTATCAACTTCTTCACGCAGTTTAAGTTAACTTACAAATGTAAGTATACTCAGCTTCATAGCGTAAAATTGTTGAGTGAACTAACTTTTTTAAGTCAATTTAATATATTTGATTGCTTGAAGAAGTTGATACAACCTCATTCGAAGTTATATCAGCAAACAATTTGtcaactcaacttaaaattgtttgTTGTAACAAAAACCTGAAAAAGTTACCTGGTTGCCTTGAAATTATGAGTTAAATCGACTAAATATTCTTTGTTGTAACAATTAACAAAGTTTACACAGTTGACTTACAATTAAGAGTTCAATGAATTCAACACAAGTTAACAtgacaaatgcattttaaaaagtaacagaacGTCAGCACAAATAAActgtaataacatttattataactttaattcaattcaattcagctttatttgcatagcgcttttacaatgtagactgtgtcaaagcagcttcacacaaATGATCATAGTAACTGGATTAGGGTAGTTcaatttttagtgtttaagttcagttcagtttagctcagttcagtgtggtttaaaatcattactgagagtccaaacactgaagagcaaattcatcaatgggtagctctaccgatcccaaaccatgcaagctgcagcagagagggggaaaaaaacttcaccaataggcgtgaggaaaaaaaaaaccttaaaagaaaccagactcagtttctcttcaagaaaacatttttattcaagtAGAACTTATCAATTcaataaattcatattaaaacTCCTTGAAGTAACTGGATACAATCTGTAAATtcaaacacctctaaaaaaaaaatcatgccaaAAGTTCAATTCAATCGttataaataatttcttaaacACCATTAAAATGAACCTTTTGAAATGTTTCTTCATCTATTCAACATTTTAAAGGCTTACatcaattcataacattttattttgaaaagtgtgtTTACAACTGATTTTGTTCCCCCATGCTGAAACTGATATTCTATGCTTTGCAAAAGTTCACAGAGTAAGAAACAAACTCTTAAGTGTTTTTATTGGATTTTTGCTCACCCATGCACTTACTGATATCCATGTTGTTCATTCAACTTTAAGGACTAAATCCCAATCCAGTGTAATGAGTTGCTTAAATAAAAGGATTTGGCTGGTTGTTTTAActgctcatttaaaatgagctcaaacaacacaatttttgagggTTTTATTTTTGAGAcaactgaaatattttatgttcaatccatttatatttgtaaaaactgaTAAGGTAAATTAATTGacttgtgtttggacaacatgaaggaaatgtgtgggacccagcattttttttttgtagttctaATATTAATACCATAAACGTAATATCAAAGTAATTGCAATATAATTTTTGAATGGCAGTTGAGGTTaattataatttcatttttttattatgtatttttatatggtatttaaataatgtgtatttttgtattaataaatattaataaaaacaataaaattgggTTGGTgctggttgttgtttttttcatgtgtgctctttttatttctaattatttcAGTAAATTCT
>TCONS_00020513
CTACTCTCTGTGCCAGGGTGAGGCTACCGATCTCATTCTCctggagtgtgtgagtgtgtgagtggaGTTAGGAGGCGAGGATGGAGAAAGAGGCGGTTAGTGGAGAGGAGCGAGAGGAAGGATGCatgaaagagagtgtgtgtgagatcaGAGCTGGGGAAGCTCGTGGAAGCGACAGGACACAATCAGCACCACTGTCTGCAAAGATCATGAGGGTTTCCGAAGGCCGTCAGAATGGCTCTTCCTCCATGATGTTACAAGAGACTGAGTGCATCCTCAAATGTGTAAGtgtattgcaataataataataataataataattatcattattattattaaatattattattattattattattatatcagatTTTCTTCATCTGTTAATGCACACCTTGCATGAAACCAAGTATGCtttatttctaaacaaaaaagttaatgtaaattaTTTCTGGAGGTTCCTCTTTTTATCATTAAGAACAGCAGCTGAAGAGtctttgtcctgtttctagttcaaatacctcaaaattcctaaatcaagaagctttttcaagacaagtaataaatattgtttttttcaaaaataattaatcaaaattaagtgagtttttctcttaaaacaagctaaatattcaATGGGGTATAAGTGGAAAAACGTTATTCCAAACTAAAACCAAGATTATCTTGCTTACCCTATTGAATATATGGGGAATCTTTAGGTAGgctatttgctcagggttaattATGGCATGCTTCCAAGGTTTTAACCATAGAGGCGGCAGACGTCTTCTTGCCAATAATTGAAAAAGTTCTGTAAAATTTTAATGAGAAACCCAGAGGAAATAATTTTTGCAGcatgaaagtattttttattatactcaatattttttgattttaaaaaagtctTTGAAAGTATGTAAAATCTTATACTGTTGTGACGGTAATCACAAGGATACAAGATTTTACTagcatactt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0044297 cell body cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000105487

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022114 False 2485 lncRNA 0.34 3 7834219 7881277
TCONS_00020513 True 976 lncRNA 0.35 2 7856500 7881252

Neighbor

gene id symbol gene type direction distance location
XLOC_010440 tcaim coding downstream 5371 7802730 ~ 7828848 (-)
XLOC_010439 trim71 coding downstream 40762 7742658 ~ 7793457 (-)
XLOC_010438 BX511173.1 coding downstream 138003 7693881 ~ 7696216 (-)
XLOC_010437 pimr209 coding downstream 141651 7688368 ~ 7692568 (-)
XLOC_010436 NA coding downstream 213104 7508101 ~ 7621115 (-)
XLOC_010442 CU856516.1 coding upstream 86743 7968020 ~ 7984901 (-)
XLOC_010443 snrka coding upstream 166619 8047896 ~ 8132742 (-)
XLOC_010444 NA coding upstream 259435 8140712 ~ 8142312 (-)
XLOC_010445 gask1a coding upstream 306911 8188188 ~ 8251985 (-)
XLOC_010446 entpd3 coding upstream 376926 8258203 ~ 8280885 (-)
XLOC_010626 CR392024.2 misc upstream 13013835 20895112 ~ 20895175 (-)
XLOC_010430 AL845419.1 non-coding downstream 1004584 6828552 ~ 6829635 (-)
XLOC_010428 NA non-coding downstream 1182500 6648030 ~ 6651719 (-)
XLOC_010427 NA non-coding downstream 1198923 6605385 ~ 6635296 (-)
XLOC_010447 CR478208.1 non-coding upstream 406494 8287771 ~ 8288447 (-)
XLOC_010450 CU062417.1 non-coding upstream 597603 8478880 ~ 8479009 (-)
XLOC_010452 NA non-coding upstream 787704 8668981 ~ 8679462 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G100352 NA non-coding CI01000016 null 10665429 ~ 10681706 (-)