XLOC_001054


Basic Information

Item Value
gene id XLOC_001054
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11470790 ~ 11517353 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003344
gtggaccagtccctcctgcagcaaaacagccccacaacatgatgctgcctcCCCCATACTTCACAATTGGGATGTTGTTCTTAGGCTTGAGGGCTTTGATGGTGGTTGTGGAATCAGGGACCTGCATGTGGAGAGAGAGGGGAGGAGGAGGGGGGAAACTTTCAGAGACGCTCCAACTGTTTGTTTTTGAGATCTTCCAAACTAGGACATCTCCGTGCTTCTAGTTCAGCTCTCCGGAGAGCACAGAGAATCTCAAACATGTCAATTTCACTCAATATTGGAAGTCGATGGTTTTCCTCAACAATTCTGCAATCTCATTATTATTGGACTCTGGAGTTGACTGTTTTAGGCAAGGGGAATTTGTTTCTTGAATACTTTGTTTCAGTAAATATATTTGAATGAcaaatgctgtatttatactgaTGCATAAACTGCAATAGTTGCAAAACctggttaaattaaaaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003344 True 467 lncRNA 0.42 2 11470790 11517353

Neighbor

gene id symbol gene type direction distance location
XLOC_001052 knl1 coding downstream 365985 11086957 ~ 11104805 (-)
XLOC_001048 dmd coding downstream 395385 10824351 ~ 11075405 (-)
XLOC_001055 si:dkey-26i13.7 coding upstream 78445 11595798 ~ 11596829 (-)
XLOC_001056 si:dkey-26i13.6 coding upstream 88657 11606010 ~ 11607062 (-)
XLOC_001057 si:dkey-26i13.5 coding upstream 97920 11615273 ~ 11616295 (-)
XLOC_001058 si:dkey-26i13.3 coding upstream 108899 11626252 ~ 11631634 (-)
XLOC_001059 chst12b coding upstream 124129 11641482 ~ 11642513 (-)
XLOC_001051 BX004756.1 non-coding downstream 408143 11062524 ~ 11062647 (-)
XLOC_001050 NA non-coding downstream 532975 10936724 ~ 10937815 (-)
XLOC_001049 BX323090.1 non-coding downstream 600549 10870117 ~ 10870241 (-)
XLOC_001045 NA non-coding downstream 730349 10739165 ~ 10740441 (-)
XLOC_001044 NA non-coding downstream 788641 10671852 ~ 10682149 (-)
XLOC_001061 NA non-coding upstream 175804 11693157 ~ 11695392 (-)
XLOC_001062 NA non-coding upstream 194190 11711543 ~ 11714363 (-)
XLOC_001067 NA non-coding upstream 547803 12065156 ~ 12068877 (-)
XLOC_001068 NA non-coding upstream 588294 12105647 ~ 12126625 (-)
XLOC_001072 NA non-coding upstream 919505 12436858 ~ 12441010 (-)

Expression


Co-expression Network