XLOC_001061


Basic Information

Item Value
gene id XLOC_001061
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11693157 ~ 11695392 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003345
cttACTTAAAAATAGGCCAGTGTGCCGAACTCTCACAGTGAAAGCCTCGTTTCTTCTGTCCGGTCAGGATGTCCCAGATGATGATGGCTTGAGGGTCTTCTTTAGTGTCCATCAGTGGGCTGAATGTCACCACATACCTGCCAGATATTTTGAATCCGTTGTTCTCATCCGTAACTCAGAAATAGCAGCTCTTGCATTCTCTCAGAGCTTTACCTTTCGCATGGGGAGAAGTCGATGAGAGAGACGCCCTGATGGCTGAACCGCTGGATCTGCTTAAACTTCTCTCCACCCCACAGTGCAATTCCCCTTTGGTGAAAGGTGAGAGGTGGTCTCCTTTGGGAGACCAGCGGACATAAGTCTCTGTCCAGCGCTCTCTCTCTTCCACCAGTATCGGCTCCTTTGGGTCATTCGAGAATATGGCGGTTCGCTCTCCCGACTCATAGATTACACTGTATTGATCACGACAGTCTGGATCCTCAAGCCAGTGCCTCATGTTGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003345 True 499 lncRNA 0.50 2 11693157 11695392

Neighbor

gene id symbol gene type direction distance location
XLOC_001060 brat1 coding downstream 3632 11670879 ~ 11689525 (-)
XLOC_001059 chst12b coding downstream 50644 11641482 ~ 11642513 (-)
XLOC_001058 si:dkey-26i13.3 coding downstream 61523 11626252 ~ 11631634 (-)
XLOC_001057 si:dkey-26i13.5 coding downstream 76862 11615273 ~ 11616295 (-)
XLOC_001056 si:dkey-26i13.6 coding downstream 86095 11606010 ~ 11607062 (-)
XLOC_001062 NA coding upstream 16151 11711543 ~ 11714363 (-)
XLOC_001063 ttyh3b coding upstream 86152 11781544 ~ 11850353 (-)
XLOC_001064 iqce coding upstream 159318 11854710 ~ 11878845 (-)
XLOC_001065 grk4 coding upstream 207187 11902579 ~ 11973341 (-)
XLOC_001066 pla2g12a coding upstream 365892 12061284 ~ 12064799 (-)
XLOC_001054 NA non-coding downstream 175804 11470790 ~ 11517353 (-)
XLOC_001051 BX004756.1 non-coding downstream 630510 11062524 ~ 11062647 (-)
XLOC_001050 NA non-coding downstream 755342 10936724 ~ 10937815 (-)
XLOC_001049 BX323090.1 non-coding downstream 822916 10870117 ~ 10870241 (-)
XLOC_001045 NA non-coding downstream 952716 10739165 ~ 10740441 (-)
XLOC_001067 NA non-coding upstream 369764 12065156 ~ 12068877 (-)
XLOC_001068 NA non-coding upstream 410255 12105647 ~ 12126625 (-)
XLOC_001072 NA non-coding upstream 741466 12436858 ~ 12441010 (-)
XLOC_001073 BX511261.2 non-coding upstream 856908 12552300 ~ 12679517 (-)

Expression


Co-expression Network