CI01000080_00000621_00005854 (MCTP1A, MCTP1)



Basic Information


Item Value
gene id CI01000080_00000621_00005854
gene name MCTP1A, MCTP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 547 ~ 5854 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000080_00000621_00005854.mRNA
ATTCGCATGGCAAGTGCTGTTGTTTTACATCTCTGGTAGATATTATGCTATGCTTCCTCATCCTGATCCACTGCAGTCGTATAGAGCAGGGACCAGTGACCCATATGTGAAGTTTAAGATCGCAGGGAAGGAGGTTTTCCGCAGCAAGACAATCCACAAAAACCTGAACCCAGTATGGGAAGAGAAAGTCAGTCTGCTGGTGGAGAGTTTGAGAGAGCCACTCTATGTGAAGGTCTTTGACTATGACTTTGGACTGCAGGATGACTTCATGGGCTCTGCATATCTCTATTTAGAGTCCCTGGAGCACCAAAGGACTTTGGATGTGACCCTTGAACTCAAAGATCCCCACTATCCTAACCATGACTTGGGTTCACTGGAACTGGCAGTCACACTTATTCCAAAAGAGGGAGACTTCAGGGAAACAACCATGCTTATGAGAAGGAGCTGGAAACGATCCAGTAAGATAAGAAAGTGCATCTTTGTCAAGTGCTTTGTCACGGCTACAATTTAAGGCTGAAATCAGATCCAAATTCAGGGCTGTCAGTGTTTCCTTTGTGTATTGTAGCAACTGACTGAGAAAATAAA

Function


symbol description
mctp1a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; embryonic structure; notochord; optic cup; and pronephric duct. Orthologous to human MCTP1 (multiple C2 and transmembrane domain containing 1).
mctp1 Enables calcium ion binding activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; negative regulation of endocytosis; and negative regulation of response to oxidative stress. Is integral component of membrane.

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000080_00000621_00005854.mRNA True 585 mRNA 0.45 6 547 5854

Neighbor


gene id symbol gene type direction distance location
CI01000080_00103467_00104168 NA coding upstream 97462 103316 ~ 104188 (-)
CI01000080_00118423_00142677 TTC37 coding upstream 112569 118423 ~ 142677 (-)
CI01000080_00202124_00211154 HMGCR, HMGCRA coding upstream 196087 201941 ~ 211154 (-)
CI01000080_00292016_00307681 CCDC180 coding upstream 285892 290561 ~ 307681 (-)
CI01000080_00309567_00317169 CARD9 coding upstream 302192 308046 ~ 317669 (-)
G290209 NA non-coding upstream 19616 25470 ~ 28235 (-)
G290211 NA non-coding upstream 38411 44265 ~ 63306 (-)
G290191 NA non-coding upstream 108511 114365 ~ 117499 (-)
G290199 NA non-coding upstream 111777 117631 ~ 117892 (-)
G290194 NA non-coding upstream 137295 143149 ~ 152646 (-)
G290197 NA other upstream 266543 272397 ~ 279847 (-)
G290261 NA other upstream 320939 327689 ~ 329517 (-)
G290314 NA other upstream 402031 407885 ~ 408144 (-)
G292089 NA other upstream 1629908 1635762 ~ 1693395 (-)
G292349 NA other upstream 2512224 2518078 ~ 2525409 (-)

Expression



Co-expression Network