XLOC_001072


Basic Information

Item Value
gene id XLOC_001072
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12436858 ~ 12441010 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003348
aaaatctttatttttactgAAGTAATATTTCATTAGGGTGTCTTTATTTCTGCTCAAGTATTGATTTGTGTACTTTATCCACCAATGGCTAGAGAGAAACCTgtttaaaaaagtcatttttgtaGTTCTGTCAGGTGACATACAGATATTACACAATGACATCAGATTTTACACTCAAACATGCGAAACAAAAAAGATTTCTTTTTTCATCCATAAGCACAGAAAGGATTTGATATGGATGTGTTTGAGAATAAAGAGCACACAAGTCAGCAGTAAAATCCCCCATCCTGCTCTTTTCTTACTCTCTGCATCCCTTCCGAACAAACCCCATGAGCCTTCACTAGCTAAAGAACCTTCCAGAATGACATTTGGTTTGATGAGCTCAACATtttctatataaatacaaatgtatttatatgaaaGAGAAGAGAAATAGATCCTTGTCGGGCTAAAAGTGTGCGCCGAGATGTGAATGTGCATTAAATTGCCATTTCTAGTCCAAGACACATACAATATTTGCCTTTGGGCCTGTGTTGAATCACGCAGGGCTATAACCAGCAGTTTTCCAGGACCTCTCCAATAGCCAAAGCACTATAAATACATTTCACACATGTCCTCGAGATATCCACAAAGATTATACGGTAGGATAAGATCATGTAGTGCAAATCCAAAACCATACAAATCATAGACGATGCCTGAAAACCTGACAGAAATATCAAAAGGTGGCGTCCATAACCGCTGCCCCTGTCCATGTTGTTTAATAAATGAGTCTAAGTGACATGAGTTCATTTGTCAAACCTTAATTGACCGAAAGTGGCTTTGAATGCTTTCTGATTTATTACTTGGGTGTACAGCGCTGCATTTGGGTGATGAGAGCGTCTCCGATGGAAAGATGGTGACTGAAtctaaaatatgtaaacaaatctCATGTTGCGATGATGATACGATATATTACCATTTCTGTAAATTTAATCAATTAGAAGTTATTAATATACattgcatctggaaagtattcatagcgcttcacttttttcacactttttttgttacagccttattccaaaatgaattaaattcatttatttcctctaaATTTTACAGACAATACCtcttaatgacaatgtgaaaaaaagactttttttttaattgttgcaaatttattaacagAACACATAGACAGCTGGAATCGTGACACTACTACTGTAGTTGAGATCCAAAAAATAGAATATTGACACTTAAATAAAATTCATGACACGTTTATAATGACTTTATgtcaatcatgtttatgacagatttatgacaagttatgttgatttgataatgtcaagttttcaaaacaaacaacaaaaatgtgatgtatttgtttgtcaagttgtcataacaaacaatgtcatatttCCATTTAAAAGGTCATAACTAAGCAAATGAcacttgttgtttgtttgtttgtttgtttgtttgactttaTTAATCTCAAAGGGAAAATCACGTCACAATAGAGCTCTctataaaaacagatcaaataagttacacatacataaaaacaataataaaattacatacaTACTGCACACCTTAGTTTCAGTATATGCTGAAATCCATATTTAATACGATTAAAATTCAGCATAATTCATGTAGTATGATTTTGGTTATACAATATGATCATTGTTGGTAGAAATTACTTCCTGTATCTTTCtctgtaacattcattcatttattttcttttcggcttagtccctttattaatctggggtcaccacagcggaatgaaccgccaacttttccagctcgtttttacgcaacggatgcccttccagctgcaacccatccctgggaaacatccatacacactcattcacactcatacactacagacaatttagcctacccaattcacctgtactgcatgtctttggactgtgggggaaaccggagcacctggaggaaacccaaccaaacgcagggagaacaagcaaacttcacatagaaagcCATCTGAccgagccaaggctcaaaccagcgaccttcttgctgaggcgacagcactacctactgcgccacagctttAATCTTGCACTGAAGGAGCTTGCACACGCATGGACTACATCATAAAGGGGATGATTATCTTGTCCCTTTCCCAGCAGGTTACGGCATACAGGATCATAGAAGACACCACAGAATCCTAAGTCTTTAACAGTGTCTGACACAAACCAAAGGACCTCAGTTATCTTAATAGAGTGCGACTCTGACCCTTCTTAAACACCTGAATTGTATTTTCAGACCAATTGAGCTTGTCATTTAGATATACACGCAGGTACTTATATGATGAAACAATCTCAATTGCTGACTCCTGCATCCACTTGTTGTGGATGTCTGCTAAAATCGACAATCATTTCTTTGCACCTATTGGTATTTAATTTAAGACAACTTGTTTTACACCAATCAGCAAACCTTTTTAAAAGCAACCTATACTCATTCTCATCATGATCCTTTATGTAACCGACAATTGCAGAGTCATCAGTAAACTTCTGTAGATGACCATTTCTGGTGCTGTATTGAAAATCCAACATAtagaatgtaaataaatatggagCTGTTGTTATAAGCGTGCATAAATTTACATTCACATcctttcaagtaaagtgttacccaacttTCTCACAATActtttattcatgtttctgtctgcattcCCATTATGGTGTGTAATATTGCACTTATATGAAAAAGTATTACAATAAACAAATGGAACATAATATGAAATGAtatactttttcattcattcattttcctttggctcagtcccttatttatcaggggttgccacagcgaaatgaactgccaactatttctgcatatgttttaggcaatggatgtccttccagctgcaacccaactactggcaaacacccatacattcacccaattcacctatagtgcatgtatttggactgttggggaaaccggagcacccggaggaaacaagcacgaagagaacatgcaaactccacacagaaatgcccactggcacagccggaactcgaaccagtgaccttgatgctgtaaggcgacagtgctaaccactcagacACCATGCCGTGCTCGTGATAGACGTTTTATTTCGTCTATATAACATATATGGTTATATTGCACAGCACTCCAAACAACACTAAGCTCTTATCTCCATTTCTGCCAGTTACTAAAATCCCAcatcaaaataaagaaaacaccCACAAGAAAAGCTTTGCTGGCTGCTTCTCGTGACCTTGACAGGTTGGAGTTTAGTGGGAGTCCGAGTCGGATTTACTGTGGATCTGGCAAGCAAGACAGGCTGTGGTAAAAAGCCAAAGAGGAGGAATTTTGTTATGTGACATATGCTAAAAGGACTCTGCCATATACCCCCATTTAAActcctctctcgctctctcgTTTTTGTCTTGGTTTCTCTCATCAAATTGAACCATGGGGGAAATCATGCAGGCTAGACGATTGTAAAAATGTGGACTACATTCACAAGTAGTTCTTGCTGTCAATTAGAGCACTCTTTTCTGGACACAAACACCACcgcaaatgactttttttttttttgaccagtaAGAAAAATTGAGTTTGCATATTTGTAATAccattaaagggattgttcagaCCATTTATCCACCCTCAAGGGGCTCCTTATGAGTTtctatttctgttgaacactttaGAAGATACTTtgtaaaatgcaataataatattaaacagcaTTTAATTCATATGATCACACTTTTTTAAGGTACAGTTCTCACTCAAAGCATTAAtttgacttttagctcaataaactcctaattagctgcttattaatagttttcaTGGTAGTAGTTGAGTGTAGGTGTAAGGTacgtagaataagatcataaagAATATGTGCTTAATAGGTACAAAATAACAGCTAatatctgaataataataatatgagaaTTGGTACTTTAACTAACtggtatttaaattaaaatgtattgttttactttaattttgtttttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003348 True 4020 lncRNA 0.36 2 12436858 12441010

Neighbor

gene id symbol gene type direction distance location
XLOC_001071 sclt1 coding downstream 39600 12364456 ~ 12397258 (-)
XLOC_001070 cplx2l coding downstream 158277 12262980 ~ 12278581 (-)
XLOC_001069 b4galt1 coding downstream 275710 12141876 ~ 12161148 (-)
XLOC_001068 NA coding downstream 310233 12105647 ~ 12126625 (-)
XLOC_001067 NA coding downstream 367981 12065156 ~ 12068877 (-)
XLOC_001073 BX511261.2 coding upstream 111290 12552300 ~ 12679517 (-)
XLOC_001074 NA coding upstream 234414 12675424 ~ 12677983 (-)
XLOC_001075 NA coding upstream 383077 12824087 ~ 13022792 (-)
XLOC_001076 NA coding upstream 624994 13066004 ~ 13203997 (-)
XLOC_001077 pcdh18a coding upstream 819799 13260809 ~ 13271569 (-)
XLOC_001062 NA non-coding downstream 722495 11711543 ~ 11714363 (-)
XLOC_001061 NA non-coding downstream 741466 11693157 ~ 11695392 (-)
XLOC_001054 NA non-coding downstream 919505 11470790 ~ 11517353 (-)
XLOC_001078 NA non-coding upstream 923796 13364806 ~ 13678248 (-)

Expression


Co-expression Network