CI01000080_02173438_02187618 (OLFM1B, OLFM1A, OLFM1)


Basic Information

Item Value
gene id CI01000080_02173438_02187618
gene name OLFM1B, OLFM1A, OLFM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2173353 ~ 2188990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_02173438_02187618.mRNA
AGTTCTTTAGGAATGTGTCTATGGTGTATATGTGTATAAACCAAATATGTTTGATTTAAAAAAAATAAAAAAATAAAAACTCATGTATGCTGGGCAAGGGGGTGGTGGGTGGCAGGGGGTCTGATTGGAACTTGTTCAAGATATTAAAAAAAAAAAAAAAAAATGTTAAAATGAGAAGGAAACCTGTACTGCCCTCTTTTGGTCAAATAATATCATGACATGTTGAGAGACAATTGGTCAGGCTATCCTATTAAAATTCCCCTGTTCAGAAGTGACTCATAAATAGCACTCATAAAGCACTGTTTCAAAGTGTGCATAACTGAGTTATCTAACATCTGCTGATATTTAGAGTTTAATGAAATGCTCAGAGAGCATTAACAATCATAGTTACTTTATTCTAGCATATAAATAATGTGTGTAGGCATGTGTACTGCATACCGTAGAGAGAGTCGTTGTACCAGTAATCGCTACACTACACCGATGAGCCGCAATATTACACAGCGCGCAAATTATTCAATGGAGTCGACTTTGTAGAGTAACTTTAACCAGTGGGTAATGTTGTCTCGCGCAAACCAATTTTTTTTATCGTCTCCAGCACCCAGCACCCTGTGTGCATATGTAAATATATAACAAAGCGATAAATAATCACAGTAGGCCTACTAATGTTTTCAATTCTGAACCTATAGGAATGCGCTCCGGTAGCGAGCCGTTGCCACAGACGAACGCGATTTCTATTCGCAAGCGTCTATTTAGCACATATTCTGAAAAACTTGTAATCCGTTACCCACCTTTGGTGCACAGGCTACTAAAACGTTGTTTGAATACACTTTTTAAATGTTAAGTTAATGACTTATTAAGACATCGCTCTCTGCATCAAAGGCACGCGCCTATGTTACATACATTTAGCGTACAGTTATAGGCAATTTGAGAGCAGAGTGCACTATTTTATCTATTAACCGTTTTAACTATTGCTGTCAGTATGGGTATTGTGATACTAAGGAAAACTTTGTACGTGTTCAGTGATTTAGTTCGTGCGTCAAGCGCCAGGAGGAGGTTTGTGATATTTATGAATATTTCACCAGTATACCGTGTGGGCGGGGGCACGGAACCAATGAGATGAGATGGTCTGCTGAACTGCCGTCATTATTCGTGTGGAGAGAGAAGACAGAACAAGCAGTCTTCTCATAAACCGAGAGTGCTTTCGTAATTATAAAGTTCAGTATAGGATAGGTGCGAGTAGAAATGTCCGAGATGAATTCATTTGAACTGGGTGCTTTACAGAAGCACATCTCCTCTGTCAGCAGCGCAGGTTACCAGTACAGTTCTCTATTGGAATGTGTATAATGAAGGTTAGGGAAAGAGAAGAGCAGAGATGTCGGTGCCTTTGCTGAAAATTGGAGTAGTGCTCAGCACGATGGCGATGATCACCAACTGGATGTCGCAAACGCTGCCCTCTCTAGTAGGTCTAAATAGCACCAAATTAAGCGTGGCACCTCCGGGTGTGCCGGACCGGAGCACTGGCGTGCTGCCTGCTAACCCTGAAGAGTCGTGGCAGGTGTACAGCTCAGCACAAGACAGTGAGGGCAGGTGTGTGTGCACTGTTGTGGCTCCTCAGCAGACCATGTGTTCACGGGATGCCAGGACCAAACAACTGAGACAGCTCCTGGAAAAAGTCCAGAATATGACTCAGTCCATCCAGAATCTTGACCAGAGGACCCAGAAAGACCTGCAGTATGTGCAAAGAATGGAGGTGCAGTTGAAAGGCCTGGAATCTAAGTTCAAACAGGTGGAGGAAAGCCACAAGCAGAATATCGCAAAGCAATACAAGGCCATAAAAGCGAAAATGGAGGAACTTAGGCCAATGATACCAGTGTTGGAGGAATACAAGGCCGATGCAAAATTGGTAATGCAGTTTAAAGAGGAGGTCAAGAATCTGACATCAGTGCTAAGTGAACTGCAGGAGGAGATCGGGGCCTTTGACTACGAGGAGCTTCACAACAGGGTGTCTAATCTTGAGGAGAGGCTTCGTGCATGCATGCAAAAATTAGCTTGTGGGAAGCTGACAGGAATAAGTGATGCTATAACCATAAAGACATCTGGATCAAGATATGGATCCTGGATGACGGATCCGCTTGCCCCTGATGGTGATACGAGGGTGTGGTACATGGACGGTTACCACAACAACCGCTTTGTTCGGGAATACAAGTCCATGGTCGACTTCATGTATTCAGACAACTTCACCTCACATCGACTTCCTCACCCCTGGTCGGGCACAGGACAGGTGGTCTACAACGGCTCCATCTACTTCAATAAGTTCCAAAGCAACACCATCATCAAATTTGACTTTAAGACAGCCACCATCAGCAAGTCCGGTCAGCTGGATTACGCCGGCTACAACAACCGTTACCACTATTCCTGGGGTGGTCACTCCGACATTGACCTTATGGTGGACGAAAGTGGGCTTTGGGCTGTGTATGCCACCAATCAAAATGCAGGAAACATTATAATCAGCAAGCTCAACCCATCAACCCTGCAGGTCATCAAAAGCTACACCACCAACCACCCAAAGAGGAGCGCAGGAGAGGCCTTCATGATCTGCGGGACGCTTTATGTCACCAATGGATACTCGGGAGGGACAAAGGTCTACTATGCTTTCCATACCAACTCCTCTACTTATGAGTATATCGACATCCCCTTACAGAACAAGTATTCCCATATCTCCATGCTGGATTATAACCCTAGGGACAGAGCTCTTTATGCATGGAACAACGGACACCAGGTGCTGTATAACGTCACCTTGTTCCACGTCATTCGATCTGAGGAACTCTAAAGTGACATTCACCATCCGATATACAGTAGCACTGAGGAAATTTATTACTGAAAATTAGAGTAATGCCTGATGATTGTTCAATAAA

Function

symbol description
olfm1b Predicted to act upstream of or within nervous system development. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including dorsolateral placode; nervous system; optic cup; optic vesicle; and pronephros. Orthologous to human OLFM1 (olfactomedin 1).
olfm1a Involved in positive regulation of neural retina development. Acts upstream of or within axonogenesis and retina development in camera-type eye. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including dorsolateral placode; nervous system; neural tube; optic cup; and optic vesicle. Orthologous to human OLFM1 (olfactomedin 1).
olfm1 Predicted to enable amyloid-beta binding activity and identical protein binding activity. Involved in positive regulation of apoptotic process. Predicted to be located in several cellular components, including axonal growth cone; glutamatergic synapse; and neuronal cell body. Predicted to be part of AMPA glutamate receptor complex. Predicted to be extrinsic component of synaptic membrane.

GO:

id name namespace
GO:0032281 AMPA glutamate receptor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_02173438_02187618.mRNA True 2915 mRNA 0.44 6 2173353 2188990

Neighbor

gene id symbol gene type direction distance location
CI01000080_02122386_02126617 LRRC8AA, LRRC8AB, LRRC8A coding downstream 46298 2122308 ~ 2127055 (-)
CI01000080_02117016_02119929 PPIL3 coding downstream 53424 2116786 ~ 2119929 (-)
CI01000080_02113135_02116388 NA coding downstream 56965 2113094 ~ 2116388 (-)
CI01000080_02057026_02085109 PTGS1 coding downstream 88244 2055395 ~ 2085109 (-)
CI01000080_02015292_02021186 PMPCA coding downstream 151766 2014384 ~ 2021587 (-)
CI01000080_02305920_02313082 WDR5 coding upstream 116032 2305022 ~ 2313082 (-)
CI01000080_02333927_02334181 NA coding upstream 144190 2333180 ~ 2334648 (-)
CI01000080_02335056_02338218 EDF1 coding upstream 145830 2334820 ~ 2338271 (-)
CI01000080_02343279_02346069 NA coding upstream 153518 2342508 ~ 2346072 (-)
CI01000080_02371817_02374191 NA coding upstream 182757 2371747 ~ 2374191 (-)
G292214 NA non-coding downstream 83115 2090005 ~ 2090238 (-)
G292197 NA non-coding downstream 180359 1992714 ~ 1992994 (-)
CI01000080_01980939_01981859 NA non-coding downstream 191567 1979746 ~ 1982199 (-)
G292176 NA non-coding downstream 206787 1962538 ~ 1966566 (-)
G292096 NA non-coding downstream 360381 1812411 ~ 1812972 (-)
G292242 NA non-coding upstream 21853 2210843 ~ 2211065 (-)
G292262 NA non-coding upstream 74624 2263614 ~ 2266106 (-)
G292339 NA non-coding upstream 302124 2491114 ~ 2517180 (-)
G292387 NA non-coding upstream 544597 2733587 ~ 2743246 (-)
G292409 NA non-coding upstream 564145 2753135 ~ 2754693 (-)
G292089 NA other downstream 501433 1635762 ~ 1693395 (-)
G290314 NA other downstream 1765209 407885 ~ 408144 (-)
G290261 NA other downstream 1843836 327689 ~ 329517 (-)
G290197 NA other downstream 1893506 272397 ~ 279847 (-)
G292349 NA other upstream 329088 2518078 ~ 2525409 (-)
CI01000080_03207204_03212602 NA other upstream 1019995 3207204 ~ 3212913 (-)
G292714 NA other upstream 1526491 3715481 ~ 3728010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030601 olfm1a coding NC_007116.7 CM002889.2 64732036 ~ 64775757 (+)
bowfin (Amia calva) AMCG00020063 olfm1 coding CM030127.1 CM030127.1 8600803 ~ 8618634 (+)