XLOC_001074


Basic Information

Item Value
gene id XLOC_001074
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12675424 ~ 12677983 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001732
CGAAACCGAAACCCCCTTTGCGAGATTCGCCGCATCTATACCTGATTTGCGTTCAAAAATACCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAATAAAAGGAGCACATTTGAAACTTTAGTAACCATAAAAAGTACACCAAGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGGACGCGGTCAGTTTGAAATCTGGGCCAGTTCTGCAGATGATCAGATGGAGTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCAATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCAGGTGGACTGATGCAGGGTCTCGTTTAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTTCACCAGCCATCCAGAactaagtttgggcacccctgcattaCAGCTTTTCAAGGATGCTGCTGTGGACTTCTTTACACTCACCACACACACCAATCTGCAGATATTTCAAAtcatacaaaacataaaaaaacattcaaaaaacaaagtaattttacTGCACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATGATCCTACCTCTTATTTTGGATTATTTTTACCTCAAATGTGTTAGTTCCCTTGTCTACAGGTCCAGCTCCATCACAACAGCTCTGcagaaaaatcacacacacacaacagcaatcAGAAAGCTGATGTAATCACTGTttgaaaatacaataactaacaataaatagcaaatgtaaaatatgtttttttagttCCTGTACTGTACTCAATAAAAGCC
>TCONS_00001731
AAAGTGACTTGTGTATCTGCCAACCAAAACGTGGGCTCTCAGAGAAATTCAGCCAATAGGGGATGGTGCGTGACGTCACCGCTCTAGCGCTGCGGAGGCTGAACTTCGAAACCGAAACCCCCTTTGCGAGATTCGCCGCATCTATACCTGATTTGCGTTCAAAAATACCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAATAAAAGGAGCACATTTGAAACTTTAGTAACCATAAAAAGTACACCAAGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGGACGCGGTCAGTTTGAAATagctgaatcaATGACATCCTGAAAGCAGCAATGCAGTTAAGCTGGGCCAGTTCTGCAGATGATCAGATGGAGTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCAATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCAGGTGGACTGATGCAGGGTCTCGTTTAATTCACTACAGGAGAACAGGAGTGGCCAAACTCAGTCCAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGACTCTAAACTTCACCAGCCATCCAGAactaagtttgggcacccctgcattaCAGCTTTTCAAGGATGCTGCTGTGGACTTCTTTACACTCACCACACACACCAATCTGCAGATATTTCAAAtcatacaaaacataaaaaaacattcaaaaaacaaagtaattttacTGCACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATGATCCTACCTCTTATTTTGGATTATTTTTACCTCAAATGTGTTAGTTCCCTTGTCTACAGGTCCAGCTCCATCACAACAGCTCTGcagaaaaatcacacacacacaacagcaatcAGAAAGCTGATGTAATCACTGTttgaaaatacaataactaacaataaatagcaaatgtaaaatatgtttttttagttCCTGTACTGTACTCAATAAAAGCC
>TCONS_00001733
ACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGGACGCGGTCAGTTTGAAATagctgaatcaATGACATCCTGAAAGCAGCAATGCAGTTAAGACAGAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTGCAGATGATCAGATGGAGTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCAATGCCCGAGATACGGATGATGAAGAGAC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000102049

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001732 False 907 lncRNA 0.42 2 12675424 12677877
TCONS_00001731 False 1054 lncRNA 0.43 3 12675424 12677983
TCONS_00001733 True 257 processed_transcript 0.51 3 12675987 12677715

Neighbor

gene id symbol gene type direction distance location
XLOC_001072 NA coding downstream 234414 12436858 ~ 12441010 (-)
XLOC_001071 sclt1 coding downstream 278166 12364456 ~ 12397258 (-)
XLOC_001070 cplx2l coding downstream 396843 12262980 ~ 12278581 (-)
XLOC_001069 b4galt1 coding downstream 514276 12141876 ~ 12161148 (-)
XLOC_001068 NA coding downstream 548799 12105647 ~ 12126625 (-)
XLOC_001075 NA coding upstream 146104 12824087 ~ 13022792 (-)
XLOC_001076 NA coding upstream 388021 13066004 ~ 13203997 (-)
XLOC_001077 pcdh18a coding upstream 582826 13260809 ~ 13271569 (-)
XLOC_001078 NA coding upstream 686823 13364806 ~ 13678248 (-)
XLOC_001079 NA coding upstream 807292 13485275 ~ 13488822 (-)
XLOC_001067 NA non-coding downstream 606547 12065156 ~ 12068877 (-)
XLOC_001062 NA non-coding downstream 961061 11711543 ~ 11714363 (-)
XLOC_001061 NA non-coding downstream 980032 11693157 ~ 11695392 (-)
XLOC_001080 FP236197.1 non-coding upstream 918315 13596298 ~ 13604379 (-)

Expression


Co-expression Network