XLOC_010891 (aldh5a1)


Basic Information

Item Value
gene id XLOC_010891
gene name aldh5a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36934183 ~ 36945900 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021313
TCCGCGTCGCTCCTGCGGACTGAAGGCTTCATAGACGGGCGCTGGGTGTCCGCGGCCTCCTCCTTCCCCGTCTTTGATCCAGCCACCGGAGAGGAGATCGCCAAAGTCTCGGACTGCGGTACAAAAGAGGCTCAGGACGCTGTCAACGCCGCGCACAAAGCCTTTAACCTGTGGAAGAACCACACGGCCAAGGAAAGAAGTATTTTGCTGAGAAAATGGTTTGATCTGATCATTCAGCACAGGGAAGATCTTGCCAAGTTGATCACAGCAGAATGTGGGAAGCCCATGAAGGAGTCTCTTGGTGAAATGACGTACTCTGCCTCTTTTCTGGAGTGGTTTTCTGAAGAGGCCAGGCGTGTGTATGGAGACATCGTCGCGGCTCCAGCCAAAGACCGCAAGATCCTGATCCTCAAGCAGCCAGTTGGAGTGGCTTCCATCATTACACCTTGGAATTTCCCAAGCGCCATGATAACCAGGAAGGTTGGGGCTGCACTTGCAGTGGGCTGTACTGTAGTGGTGAAGCCGGCTGAAGATACGCCTCTCTCTGCACTGGCCCTCGCTGAGCTGTCGGTTCAGGCTGGCATTCCTGCTGGGGTGTTTAACGTGGTGCCCTGTTCAAGAGAGAAGACGCCCGCTGTGGGAGAGCTGCTCTGCACAGACCCTCTAGTAGCCAAAATCTCATTCACCGGCTCCACAGCCACTGGCAAGGTTTTATTAAGACATGCTGCAGGAACTGTGAAAAGGGTCTCCATGGAATTGGGAGGACATGCTCCCTTTATTGTGTTTGACAGCGCTGATGTAGATAAAGCTGTTGCAGGAGCCATGGGCTCAAAATTCAGAAACTCAGGACAAACCTGTGTGTGCTCCAACCGCTTTTTGGTCCAGACTGGCATTCATGATGCTTTCGTGGAGAAGCTGGCGAAGACTATGGATGCAGAGCTGAAGCTTGGCCACGGATCCGAGCCCAGCACCACACAGGGGCCTCTTATCAACTCACGCGCCGCAGAAAAGGTGGAGAAGCAGGTTGCAGACGCTGTGGATCATGGAGCGGTCGTAGTTCGAGGTGGAAAGAGACTGCAGGGCTCTTTCATGGAGCCGACGCTGCTGTCCAACGTTACCTCTGACATGCTCTGTATGAGAGAGGAGACCTTTGGACCTCTTATTCCAGTTGTTAAGTTCAACACAGAACAGGAGGCACTTGCCATTGCCAATGCTTCTCCTGTTGGTTTAGCAGGTTACTTTTACTCCAGGGACATGGCTCAGATCTGGCGGGTGGCAGAGCAGATGGAGGTGGGGATGGTCGGGGTCAACGAAGGCATGATCTCCACCACCGAAGCCCCTTTTGGAGGAATCAAACAGTCCGGATTGGGCAGAGAAGGATCCATATATGGCGTTGATGAGTATCTGGAAATCAAGTACATGTGTTTGGGGGGACTCTCTTGAAAACAATGGcagttacagaaaaacactgtgtATCATTCCCACTTTTAGTCTTACTATTCAGTATATGGAAATGACGATGATGTACTTTATGGCCCGTTTTCACTGAGAGGTACGGTACGATACCTTTATCAGGCTtatgtttccactgccaaaagggtaccaatcgTACCCTtatggtgggcgtggtgtacaacaAAGTTTTAGTCGACATCATTCTTGCTCGAGGAAATGTTTAAAGTAAAGCTGTAAgggttgttcacatatcatataagaagcacttctcaaatagatgctttatacacataaaatgtgtaaatgttcattactaacctttctatgaataTGATTTGATTTATAACTTCAGATCAATGATTTTAGTG
>TCONS_00021314
GAGTATACACTACATCACGTGATCAGAGGACAGAATTCGTGAATCCGGAGTGTGCCGTTTGGGGGCGATTCTCGTTTCTCCCTATGGTTTCTCCCCTGACTGACTCAGTTCACTCAAACGATTCGGTTCAAAAGTGATTCATTCATGAATCGGACGCCGCTAACGTCGCCAATCAACACTAGAGTGTTGACATTTCCTGCTTTGCAGTTTGCAGTGTTAACTGGCTTACCGAGCATGGTGCAGTTGCAGCGGCCGTACAGCCTCGATGTGTCCGCGTCGCTCCTGCGGACTGAAGGCTTCATAGACGGGCGCTGGGTGTCCGCGGCCTCCTCCTTCCCCGTCTTTGATCCAGCCACCGGAGAGGAGATCGCCAAAGTCTCGGACTGCGGTACAAAAGAGGCTCAGGACGCTGTCAACGCCGCGCACAAAGCCTTTAACCTGTGGAAGAACCACACGGCCAAGGAAAGAAGTATTTTGCTGAGAAAATGGTTTGATCTGATCATTCAGCACAGGGAAGATCTTGCCAAGTTGATCACAGCAGAATGTGGGAAGCCCATGAAGGAGTCTCTTGGTGAAATGACGTACTCTGCCTCTTTTCTGGAGTGGTTTTCTGAAGAGGCCAGGCGTGTGTATGGAGACATCGTCGCGGCTCCAGCCAAAGACCGCAAGATCCTGATCCTCAAGCAGCCAGTTGGAGTGGCTTCCATCATTACACCTTGGAATTTCCCAAGCGCCATGATAACCAGGAAGGTTGGGGCTGCACTTGCAGTGGGCTGTACTGTAGTGGTGAAGCCGGCTGAAGATACGCCTCTCTCTGCACTGGCCCTCGCTGAGCTGTCGGTTCAGGCTGGCATTCCTGCTGGGGTGTTTAACGTGGTGCCCTGTTCAAGAGAGAAGACGCCCGCTGTGGGAGAGCTGCTCTGCACAGACCCTCTAGTAGCCAAAATCTCATTCACCGGCTCCACAGCCACTGGCAAGGTTTTATTAAGACATGCTGCAGGAACTGTGAAAAGGGTCTCCATGGAATTGGGAGGACATGCTCCCTTTATTGTGTTTGACAGCGCTGATGTAGATAAAGCTGTTGCAGGAGCCATGGGCTCAAAATTCAGAAACTCAGGACAAACCTGTGTGTGCTCCAACCGCTTTTTGGTCCAGACTGGCATTCATGATGCTTTCGTGGAGAAGCTGGCGAAGACTATGGATGCAGAGCTGAAGCTTGGCCACGGATCCGAGCCCAGCACCACACAGGGGCCTCTTATCAACTCACGCGCCGCAGAAAAGGTGGAGAAGCAGGTTGCAGACGCTGTGGATCATGGAGCGGTCGTAGTTCGAGGTGGAAAGAGACTGCAGGGCTCTTTCATGGAGCCGACGCTGCTGTCCAACGTTACCTCTGACATGCTCTGTATGAGAGAGGAGACCTTTGGACCTCTTATTCCAGTTGTTAAGTTCAACACAGAACAGGAGGCACTTGCCATTGCCAATGCTTCTCCTGTTGGTTTAGCAGGTTACTTTTACTCCAGGGACATGGCTCAGATCTGGCGGGTGGCAGAGCAGATGGAGGTGGGGATGGTCGGGGTCAACGAAGGCATGATCTCCACCACCGAAGCCCCTTTTGGAGGAATCAAACAGTCCGGATTGGGCAGAGAAGGATCCATATATGGCGTTGATGAGTATCTGGAAATCAAGTACATGTGTTTGGGGGGACTCTCTTGA
>TCONS_00021315
ATCAACACTAGAGTGTTGACATTTCCTGCTTTGCAGTTTGCAGTGAGTGAAACGCAGAGTTGCATGCATAAGCAGTCGAAAGAACTACGTGTTTAGCGGAAATTAATAACCGAGAATCTTCTCTCGCATACATAAACAGTCGAGAGGAGAATGTAATTGCTACAAACGAGTTTAAAATCGCATGTTAAGAGCGACTGCTCTCGTTCTTTCACTGGACTAAGCTCCTCCTGCACAtacatatctatatatttatagatatagGAGTGTGTCATTGTTTATCATGGCCAGTTTATGTCTCTCAAGAGGTCGGTGTGTCCTCCGGCAGGTGTTAACTGGCTTACCGAGCATGGTGCAGTTGCAGCGGCCGTACAGCCTCGATGTGTCCGCGTCGCTCCTGCGGACTGAAGGCTTCATAGACGGGCGCTGGGTGTCCGCGGCCTCCTCCTTCCCCGTCTTTGATCCAGCCACCGGAGAGGAGATCGCCAAAGTCTCGGACTGCGGTACAAAAGAGGCTCAGGACGCTGTCAACGCCGCGCACAAAGCCTTTAACCTGTGGAAGAACCACACGGCCAAGGAAAGAAGTATTTTGCTGAGAAAATGGTTTGATCTGATCATTCAGCACAGGGAAGATCTTGCCAAGTTGATCACAGCAGAATGTGGGAAGCCCATGAAGGAGTCTCTTGGTGAAATGACGTACTCTGCCTCTTTTCTGGAGTGGTTTTCTGAAGAGGCCAGGCGTGTGTATGGAGACATCGTCGCGGCTCCAGCCAAAGACCGCAAGATCCTGATCCTCAAGCAGCCAGTTGGAGTGGCTTCCATCATTACACCTTGGAATTTCCCAAGCGCCATGATAACCAGGAAGGTTGGGGCTGCACTTGCAGTGGGCTGTACTGTAGTGGTGAAGCCGGCTGAAGATACGCCTCTCTCTGCACTGGCCCTCGCTGAGCTGTCGGTTCAGGCTGGCATTCCTGCTGGGGTGTTTAACGTGGTGCCCTGTTCAAGAGAGAAGACGCCCGCTGTGGGAGAGCTGCTCTGCACAGACCCTCTAGTAGCCAAAATCTCATTCACCGGCTCCACAGCCACTGGCAAGGTTTTATTAAGACATGCTGCAGGAACTGTGAAAAGGGTCTCCATGGAATTGGGAGGACATGCTCCCTTTATTGTGTTTGACAGCGCTGATGTAGATAAAGCTGTTGCAGGAGCCATGGGCTCAAAATTCAGAAACTCAGGACAAACCTGTGTGTGCTCCAACCGCTTTTTGGTCCAGACTGGCATTCATGATGCTTTCGTGGAGAAGCTGGCGAAGACTATGGATGCAGAGCTGAAGCTTGGCCACGGATCCGAGCCCAGCACCACACAGGGGCCTCTTATCAACTCACGCGCCGCAGAAAAGGTGGAGAAGCAGGTTGCAGACGCTGTGGATCATGGAGCGGTCGTAGTTCGAGGTGGAAAGAGACTGCAGGGCTCTTTCATGGAGCCGACGCTGCTGTCCAACGTTACCTCTGACATGCTCTGTATGAGAGAGGAGACCTTTGGACCTCTTATTCCAGTTGTTAAGtgagtgtttttttaatttatataacttcacaatattattatgtagctTTTAGATGTTTCTACCCAAAGTTGCAGATGTAACTTGTATAAGAAAATGTCATTTTGCGTAAATAATTTGCTACTGTTTTCATCCAGTGCGTTTACTCGAATTGAATTTTGTACTTTACAGTCAcattagggatgctctgatcagcaTTTTTATTGCCAATACTaagtaccgattccttgtcatggtgatcggctgataTTGTGTACGGATTCTggtgctttaagctgtataatgCACAAAGCACAATTTTCCTCTAAGTATGATATTTAAGTGGAGATCTCctagagaataaatgaaggatgttgaATATTA
>TCONS_00021316
GCAAGGTTTTATTAAGACATGCTGCAGGAACTGTGAAAAGGGTCTCCATGGAATTGGGAGGACATGCTCCCTTTATTGTGTTTGACAGCGCTGATGTAGATAAAGCTGTTGCAGGAGCCATGGGCTCAAAATTCAGAAACTCAGGACAAACCTGTGTGTGCTCCAACCGCTTTTTGGTCCAGACTGGCATTCATGATGCTTTCGTGGAGAAGCTGGCGAAGACTATGGATGCAGAGCTGAAGCTTGGCCACGGATCCGAGCCCAGCACCACACAGGGGCCTCTTATCAACTCACGCGCCGCAGAAAAGGTGCATCATGGGAACAACAGATACAGCAACTTATGATTCTGGTGGATGCAAACATTCAAGTCACTCTGCAACACAAGCATACAGGCCAAACACACGACTTAGACATctgattaaatatgatttttttttttttactattgggTGCAGAAAACTATAGTTTATTTATGTAAGAGTGGAtggcaaaataaaagtaaacagtgacaaattttatttaaaaaattttccgGCAGC

Function

symbol description
aldh5a1 Predicted to enable NAD binding activity and succinate-semialdehyde dehydrogenase (NAD+) activity. Predicted to act upstream of or within galactosylceramide metabolic process; gamma-aminobutyric acid catabolic process; and short-chain fatty acid metabolic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in succinic semialdehyde dehydrogenase deficiency. Orthologous to human ALDH5A1 (aldehyde dehydrogenase 5 family member A1).

GO:

id name namespace
GO:0006681 galactosylceramide metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009450 gamma-aminobutyric acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0004777 succinate-semialdehyde dehydrogenase (NAD+) activity molecular_function
GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00650 Butanoate metabolism
ko00250 Alanine, aspartate and glutamate metabolism

ZFIN:

id description
ZDB-GENE-070228-2 Predicted to enable NAD binding activity and succinate-semialdehyde dehydrogenase (NAD+) activity. Predicted to act upstream of or within galactosylceramide metabolic process; gamma-aminobutyric acid catabolic process; and short-chain fatty acid metabolic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in succinic semialdehyde dehydrogenase deficiency. Orthologous to human ALDH5A1 (aldehyde dehydrogenase 5 family member A1).

Ensembl:

ensembl_id ENSDARG00000076544

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021313 False 1823 mRNA 0.50 10 36934183 36945347
TCONS_00021314 False 1713 mRNA 0.53 11 36934563 36945900
TCONS_00021315 False 1918 mRNA 0.48 8 36937118 36945729
TCONS_00021316 True 539 lncRNA 0.43 3 36939727 36941953

Neighbor

gene id symbol gene type direction distance location
XLOC_010890 tdp2a coding downstream 28394 36901549 ~ 36905789 (-)
XLOC_010889 pnp4b coding downstream 99550 36807924 ~ 36834633 (-)
XLOC_010888 calb1 coding downstream 135400 36765934 ~ 36798783 (-)
XLOC_010887 pik3r4 coding downstream 185809 36721230 ~ 36748374 (-)
XLOC_010885 NA coding downstream 323547 36578495 ~ 36610636 (-)
XLOC_010892 NA coding upstream 10850 36956750 ~ 36959179 (-)
XLOC_010893 snrnp48 coding upstream 28623 36974523 ~ 36979597 (-)
XLOC_010894 BX248115.1 coding upstream 211105 37157005 ~ 37157121 (-)
XLOC_010895 si:ch211-208k15.1 coding upstream 220672 37166572 ~ 37470042 (-)
XLOC_010896 mrap2a coding upstream 1001442 37947342 ~ 38001141 (-)
XLOC_010626 CR392024.2 misc downstream 16039008 20895112 ~ 20895175 (-)
XLOC_010886 NA non-coding downstream 334443 36580443 ~ 36599740 (-)
XLOC_010884 NA non-coding downstream 363716 36507489 ~ 36570467 (-)
XLOC_010883 NA non-coding downstream 442343 36491517 ~ 36491840 (-)
XLOC_010882 NA non-coding downstream 468538 36461637 ~ 36465645 (-)
XLOC_010899 NA non-coding upstream 1253013 38198913 ~ 38341804 (-)
XLOC_010901 NA non-coding upstream 1439908 38385808 ~ 38394558 (-)
XLOC_010904 CU855886.1 non-coding upstream 1616627 38562527 ~ 38562644 (-)

Expression


Co-expression Network