CI01000113_01761054_01815819


Basic Information

Item Value
gene id CI01000113_01761054_01815819
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1760927 ~ 1815997 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_01761054_01815819.mRNA
CTTTAAATAAAGCTGCAATTGGATCTTAATCTGCAAGTCTCAGAGCACCATGACATAAATCTCAATCCACTTTAGCTCCAGCAGTATGGGGATATAGGTTGTCCCTCCAGCCACTAAGAGGGAGCGGATGGCTCGTATTCAGGCATTGACTGTGCTGCATCAACAGGGGTTGGAGGTAGGAAACTTTGCCCAGACCTTTTGGACCATGGCGGTGGGGTTGGATTATAATGATGTTGTTCTTAAGGATATCTTTAATAAATGCCTTGATGACCCTCTGCCCTTATGGGAGATGGATGGACTTCAGATCTTGGATTTTTGGGGCTTTGTCAGATATCTCCACAATCGTTGTCAATGGGCAATACCAGGTCAATCAATACCCTTCCGCAGAGACTTTCCTGCCATCCCTCCTTCATCGAGTCAAAACCCTGACTTCTTGAATCCCACTGGGAAGCGCAGGTTAAGGAGAAGGAGAACTAGTTCAGTGTTCACTGGAGACTCAGTTACTCTGAGATGTAAGGTGGATCCGTCACGGGATGGATGGGAGTTTCTCTGGAGTAAAAACTCAAACCCTGAATCTACTGAAGCTGCAACTAAAACAATCAGTCCTGTGAAAGTCTCTGATGGAGGAGAGTACAGAGGAGACTCAGTCACTCTCAGATGTGTTATATATGATGGAGTCACTAGCTGGAGGTACAACTGGTATAAAGGAGGTTCATTCAGTGTTTTCAGTGAACGACAGGAACACACATTCAGTTCTGTTTCTGAGTCTGACGCTGGTAAATACTCCTGTGATGGATTAGAGAGAGGAGGATCACGCTGGTCACACCGCAGTGATGAAGTTACACTGACAGTATCAGGTGAGTTTGATCATCTCTTCATAAACACACACAAGTTGGTGGATCCGTCACGGGATGGATGGGAGTTTCTCTGGAGTAAAAACTCAAACCCTGAATCTACTGAAGCTGCAACTAAAACAATCAATCGTGTGAAAGTCTCTGATGGAGGAGAGTACAGAGGAGAGACAGTCACTCTCAGATGTGACATTGATCCTGAAGGAGTCACTAGCTGGAGGTACAACTGGTACAAAGGAGGTTCATTCATGAATACCAGTGAACGACAGGAACACACATTCAGTTCTGTTTCTGAGTCTGACGCTGGTAAATACTCCTGTAATGGAACAGAGACTGAAGGATCACGCTGGTCACACCGCAGTGATGAAGTTACACTGACAGTATCAGAAAGACCAAAAGCCAAAGTGACCATTAAACCTGATCAACATGTATTCAGAGGAGACTCAGTCACTCTCAGATGTGACATTGATGCTGAAGGAGTCACTAGCTGGAGGTACAGCTGGTATGAAGGAGGTTCATTCAGTTTTTTCAGTCAACTACAGGAACTCACATTCAGTTCTGTTTCTGAGTCTGACGCTGGTAAATACTCCTGTAATGGATTAGAGAGAGGAGGATCACACTGGTCACAACTCAGTAATGAAGTTACACTGACAGTATCAGATCCCAGAGCAGTTTTAAGTGTTTCTCCTCAGAAGTGGTTGACTGAAGGAGTATATTATCCTGTTAATATCACTGTACACATTGGTGTGATTCTGGAGAGTCCTGTTCATCCTGTGACTGAAGGAGATAATCTGACTCTACACTGTTTATATCCATATACAAACCCATCAAACCTCAGAGCTGATTTCTATAAAGATGGATCACTCATCCAGAATCAAACTACAGAGATGATCGTTCCTACTGTCTCAAAGTCACATGAGGGTTTCTACTACTGCAAACACCCAGAGAGAGGACAGTCGCCCAAGAGCTGGATCTCAGTCAGAGGGTCTCATTCAGACTCTCAGATCTCTGTCCTCAACATAGTCAGTTCTGTACTGGCAGCTTGTCCATATCTGCTAGTGACAGTCGTGCTGATTTACAAATGCTGCAGAATGAGAGCTGCACTGATGTTCTCTGTCCAGGTCCTCACAGATGTGGACACCAAGGAACTTAAGACATTATTAGGACAAGTGACTGGAGCTTTCTTTAGAACAGGGATGATAGAGATGGACTTGAAGCAGAAAGGAACAGTAGCCAGGAAAAGGAGGATCATGGATCCAGCTCATGTTTTTCATGAAACTTTCACAATGATGCTGTCAGTCCAAAATACAGATTCAAGTAATTCTAGTTCCAGTCCATCTTTCATCATTTCATCTGTTAACAGCAACAACTGCAGCAGTCAACTCCATACGTGGAGTGATGGGCTGCTTCAACGGCGCTACGCAAGACTTCCCTATCATGAAGGCACAAGATGAGAGTCAAAATCAGTCAAAATAATCATCAATATTATGTGGTCACATTCGGCTTTGTTCACTGAGGGTTTGTTCTTTGTAAAGCTGCTTCAAAAACAGCGTTATGAAAACTGCCTTACAAATTCTGAACTGTCAAATTGGGTTACGTTACAGTAATATATATAAAAGATGATGATAGTTA

Function

NR:

description
leukocyte immune-type receptor TS32.15 L2.1a, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_01761054_01815819.mRNA False 2483 mRNA 0.44 13 1760927 1815997

Neighbor

gene id symbol gene type direction distance location
CI01000113_01716646_01752755 NA coding upstream 7576 1715749 ~ 1753351 (+)
CI01000113_01698764_01709585 NA coding upstream 51219 1698624 ~ 1709708 (+)
CI01000113_01691097_01696776 NA coding upstream 64151 1691062 ~ 1696776 (+)
CI01000113_01666106_01684663 NA coding upstream 76226 1666066 ~ 1684701 (+)
CI01000113_01547153_01553082 NA coding upstream 207141 1546736 ~ 1553786 (+)
CI01000113_01826332_01833431 NA coding downstream 9857 1825854 ~ 1833529 (+)
CI01000113_01834891_01839297 KCNJ2, KCNJ2A coding downstream 18894 1834891 ~ 1840126 (+)
CI01000113_01983091_01989335 NA coding downstream 167094 1983091 ~ 1989335 (+)
CI01000113_01994682_02001599 DNAAF5 coding downstream 178685 1994682 ~ 2002028 (+)
CI01000113_02042831_02055567 NA coding downstream 224001 2039998 ~ 2056124 (+)
G331793 NA non-coding upstream 3949 1755457 ~ 1756978 (+)
G331756 NA non-coding upstream 122494 1638118 ~ 1638433 (+)
G331755 NA non-coding upstream 124267 1636151 ~ 1636660 (+)
G331747 NA non-coding upstream 151501 1609221 ~ 1609426 (+)
G331746 NA non-coding upstream 159319 1601376 ~ 1601608 (+)
G331840 NA non-coding downstream 39834 1855831 ~ 1856934 (+)
G331820 NA non-coding downstream 90422 1906419 ~ 1909070 (+)
G331824 NA non-coding downstream 182447 1998444 ~ 2057885 (+)
G331833 NA non-coding downstream 214841 2030838 ~ 2034228 (+)
G331907 NA non-coding downstream 255538 2071535 ~ 2072337 (+)
G331767 NA other upstream 97672 1662785 ~ 1663255 (+)
CI01000113_01424978_01425704 NA other upstream 335221 1424968 ~ 1425835 (+)
G331615 NA other upstream 514354 1246291 ~ 1246573 (+)
G331487 NA other upstream 838794 917735 ~ 922133 (+)
G331470 NA other upstream 844390 913392 ~ 916537 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 527424 2342987 ~ 2346006 (+)
CI01000113_02548934_02576888 TBL3 other downstream 752770 2548934 ~ 2577790 (+)
G331790 NA non-coding upstream 21459 1733674 ~ 1781690 (+)

Expression


Co-expression Network