G331456


Basic Information

Item Value
gene id G331456
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 869338 ~ 869749 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376764
TGCTTTTTTATACATCATCTTCCCAGCATCAGAAAACAGAAGGCTATAAGGCCAGAAGCCAGAATCATCAGGATTCAGAAGCCAGAAAGGTCAGAATCATCAGGATTATCAAACATCCAACTCTGAGTGGAATCAGTCCAGCACAACTCACAGTTATTTCTCTTTCAGCGTCACTCTCTTGCTGACATTGAGACAACTGGTCAGTCCCATCTGCAAACCACAGCAATACTTTTCTGGGTCATAAAAAGCCCAGATCTGGTCACACCGTTCAGCCACTGCCCTCCTATGGGGCAAGAGGTATAAGAAATGGTTTGTTGCCATAGCAATGTCCATTACAGTCCCAGTAGGAGAAGGTGTGAGAGGCAGATTGCTCGTCGGCC
>TU376765
TGCTTTTTTATACATCATCTTCCCAGCATCAGAAAACAGAAGGCTATAAGGCCAGAAGCCAGAATCATCAGGATTCAGAAGCCAGAAAGGTCAGAATCATCAGGATTGTCCAGCACAACTCACAGTTATTTCTCTTTCAGCGTCACTCTCTTGCTGACATTGAGACAACTGGTCAGTCCCATCTGCAAACCACAGCAATACTTTTCTGGGTCATAAAAAGCCCAGATCTGGTCACACCGTTCAGCCACTGCCCTCCTATGGGGCAAGAGGTATAAGAAATGGTTTGTTGCCATAGCAATGTCCATTACAGTCCCAGTAGGAGAAGGTGTGAGAGGCAGATTGCTCGTCGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU376764 False 380 lncRNA 0.46 2 869338 869749
TU376765 True 352 lncRNA 0.47 2 869338 869749

Neighbor

gene id symbol gene type direction distance location
CI01000113_00659612_00684227 TRIP10, TRIP10A coding upstream 184308 659612 ~ 685030 (+)
CI01000113_00645261_00649236 NA coding upstream 219523 645261 ~ 649815 (+)
CI01000113_00629848_00638123 ANGPTL6 coding upstream 230906 628843 ~ 638432 (+)
CI01000113_00574016_00587822 DNMT1 coding upstream 281256 573455 ~ 588082 (+)
CI01000113_00568754_00569821 S1PR2 coding upstream 298822 568410 ~ 570516 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding downstream 127114 996863 ~ 1005399 (+)
CI01000113_01072283_01091398 NOTCH3 coding downstream 202156 1071905 ~ 1091730 (+)
CI01000113_01110162_01112498 NA coding downstream 240413 1110162 ~ 1112502 (+)
CI01000113_01120464_01124821 NA coding downstream 250649 1120398 ~ 1125031 (+)
CI01000113_01127641_01134250 NA coding downstream 257892 1127641 ~ 1134481 (+)
G331413 NA non-coding upstream 93153 770294 ~ 776185 (+)
G331406 NA non-coding upstream 143648 725459 ~ 725690 (+)
G331405 NA non-coding upstream 145337 723787 ~ 724001 (+)
G331397 NA non-coding upstream 154441 714446 ~ 714897 (+)
G331391 NA non-coding upstream 164599 704513 ~ 704739 (+)
G331473 NA non-coding downstream 17919 887668 ~ 887868 (+)
G331491 NA non-coding downstream 55905 925654 ~ 928787 (+)
G331506 NA non-coding downstream 61341 931090 ~ 932374 (+)
G331504 NA non-coding downstream 70777 940526 ~ 942201 (+)
G331510 NA non-coding downstream 84242 953991 ~ 973533 (+)
G331260 NA other upstream 534717 334158 ~ 334621 (+)
G331470 NA other downstream 43643 913392 ~ 916537 (+)
G331487 NA other downstream 47986 917735 ~ 922133 (+)
G331615 NA other downstream 376542 1246291 ~ 1246573 (+)
CI01000113_01424978_01425704 NA other downstream 554812 1424968 ~ 1425835 (+)
G331767 NA other downstream 793036 1662785 ~ 1663255 (+)

Expression


Co-expression Network