G331510


Basic Information

Item Value
gene id G331510
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 953991 ~ 973533 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376824
GTCCTAACCTGGCTTTTTGTGTGCATGTGAAAATATTTACATGTCTTTGTATTCCAAACACCAGGATATCTGATGATTCGTACCTCAAATACTTCCTCATCTAGTAACCGTGTCCCAAAAACAACGACTCCATCAGTGCTGACCACAGGGTTGTCTCCGCGCATTAATTCCAACGTCTGCACCTTCTTACAGTCCAGGTAGAGTGTAACAGACTTGCCCTCCACACTGTAGGCTATCCGATGCCATTCCCATCAGCCAAATTGATTTTCTTAAAAATAGGGTAGAGCTCTGGAGCCGGCTGGCCTCGGTGGTCTTCATAGAGGAATACGGGTGATCGGCCCATCTCCAGCCCCAGCTGTTGGACTCCCTGATCATCATACAAAGACACCAGGAAGAACTGAGAGTTCTTCTTAGCATTCACCGTAGTCATCAGAGAGAAGTTCTCAGGGAAAGCAGAATCTGGAAAGAACTGTTTAGTTGGGGCGCTGAGTTGAATCTTTTTGTCTATCCTGTAAGCCATGTCTGTTATTGATGTGTCCTTTCTCTCGGTGCACAGACCGGCCTCGACTGACACTCCCTCCATGTCTTCAGACAGCTCCAGGACCCGTAATACATCGATCAGATTAGCTGTTTGCGTCGTTGTGGCGCACAGAGAGAGAAGCAGCGGTACTATCGCGCAGACCACCGTCTCCTTCAGCCGCCCCATGTTCAGGACCCGTTACCTCCACTCAGGCGCTTTATCACACAACCAGGAGATTAAGACTCAGAAAGCCCAGAAGCCATATGCGTAGAGAGAGAAAGAGAGACAAGTGCTCCGGACCCGGTCTGTAGCTGCACAAGATGGAGAGGCTTTTTTTCTCTGAGTATCCTCCTCTCCTCCAAGACCTCTAAGCTCTGTCCCTCTCATTCAGTTTCTGCCTCCAGTCACTCCTTTCCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU376824 True 940 lncRNA 0.49 4 953991 973533

Neighbor

gene id symbol gene type direction distance location
CI01000113_00659612_00684227 TRIP10, TRIP10A coding upstream 268961 659612 ~ 685030 (+)
CI01000113_00645261_00649236 NA coding upstream 304176 645261 ~ 649815 (+)
CI01000113_00629848_00638123 ANGPTL6 coding upstream 315559 628843 ~ 638432 (+)
CI01000113_00574016_00587822 DNMT1 coding upstream 365909 573455 ~ 588082 (+)
CI01000113_00568754_00569821 S1PR2 coding upstream 383475 568410 ~ 570516 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding downstream 23330 996863 ~ 1005399 (+)
CI01000113_01072283_01091398 NOTCH3 coding downstream 98372 1071905 ~ 1091730 (+)
CI01000113_01110162_01112498 NA coding downstream 136629 1110162 ~ 1112502 (+)
CI01000113_01120464_01124821 NA coding downstream 146865 1120398 ~ 1125031 (+)
CI01000113_01127641_01134250 NA coding downstream 154108 1127641 ~ 1134481 (+)
G331504 NA non-coding upstream 11790 940526 ~ 942201 (+)
G331506 NA non-coding upstream 21617 931090 ~ 932374 (+)
G331491 NA non-coding upstream 25204 925654 ~ 928787 (+)
G331473 NA non-coding upstream 66123 887668 ~ 887868 (+)
G331456 NA non-coding upstream 84242 869338 ~ 869749 (+)
G331528 NA non-coding downstream 3776 977309 ~ 977746 (+)
G331529 NA non-coding downstream 5791 979324 ~ 979718 (+)
G331530 NA non-coding downstream 12550 986083 ~ 986441 (+)
G331496 NA non-coding downstream 90415 1063948 ~ 1069971 (+)
G331495 NA non-coding downstream 144278 1117811 ~ 1118539 (+)
G331487 NA other upstream 31858 917735 ~ 922133 (+)
G331470 NA other upstream 37454 913392 ~ 916537 (+)
G331260 NA other upstream 619370 334158 ~ 334621 (+)
G331615 NA other downstream 272758 1246291 ~ 1246573 (+)
CI01000113_01424978_01425704 NA other downstream 451028 1424968 ~ 1425835 (+)
G331767 NA other downstream 689252 1662785 ~ 1663255 (+)
G331759 NA other downstream 694469 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 1369888 2342987 ~ 2346006 (+)

Expression


Co-expression Network