G331528


Basic Information

Item Value
gene id G331528
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 977309 ~ 977746 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376851
TGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAATGGCTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATA
>TU376853
TGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAATGGCTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATACTGAGCAAAGGGTCTGAATACTTAGAACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGGAAAAAAAATGAACTTAAATGATTTTAGCAAATGGCTGCAATATAACAAAGAGTGAAAAATTTAAGAGGGTCTGAATACTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376851 False 227 lncRNA 0.46 1 977309 977535
TU376853 True 438 lncRNA 0.39 1 977309 977746

Neighbor

gene id symbol gene type direction distance location
CI01000113_00659612_00684227 TRIP10, TRIP10A coding upstream 292279 659612 ~ 685030 (+)
CI01000113_00645261_00649236 NA coding upstream 327494 645261 ~ 649815 (+)
CI01000113_00629848_00638123 ANGPTL6 coding upstream 338877 628843 ~ 638432 (+)
CI01000113_00574016_00587822 DNMT1 coding upstream 389227 573455 ~ 588082 (+)
CI01000113_00568754_00569821 S1PR2 coding upstream 406793 568410 ~ 570516 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding downstream 19117 996863 ~ 1005399 (+)
CI01000113_01072283_01091398 NOTCH3 coding downstream 94159 1071905 ~ 1091730 (+)
CI01000113_01110162_01112498 NA coding downstream 132416 1110162 ~ 1112502 (+)
CI01000113_01120464_01124821 NA coding downstream 142652 1120398 ~ 1125031 (+)
CI01000113_01127641_01134250 NA coding downstream 149895 1127641 ~ 1134481 (+)
G331510 NA non-coding upstream 3776 953991 ~ 973533 (+)
G331504 NA non-coding upstream 35108 940526 ~ 942201 (+)
G331506 NA non-coding upstream 44935 931090 ~ 932374 (+)
G331491 NA non-coding upstream 48522 925654 ~ 928787 (+)
G331473 NA non-coding upstream 89441 887668 ~ 887868 (+)
G331529 NA non-coding downstream 1578 979324 ~ 979718 (+)
G331530 NA non-coding downstream 8337 986083 ~ 986441 (+)
G331496 NA non-coding downstream 86202 1063948 ~ 1069971 (+)
G331495 NA non-coding downstream 140065 1117811 ~ 1118539 (+)
G331644 NA non-coding downstream 219038 1196784 ~ 1197024 (+)
G331487 NA other upstream 55176 917735 ~ 922133 (+)
G331470 NA other upstream 60772 913392 ~ 916537 (+)
G331260 NA other upstream 642688 334158 ~ 334621 (+)
G331615 NA other downstream 268545 1246291 ~ 1246573 (+)
CI01000113_01424978_01425704 NA other downstream 446815 1424968 ~ 1425835 (+)
G331767 NA other downstream 685039 1662785 ~ 1663255 (+)
G331759 NA other downstream 690256 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 1365675 2342987 ~ 2346006 (+)

Expression


Co-expression Network