CI01000119_02031570_02032574 (SOX1A, SOX1B, SOX1)


Basic Information

Item Value
gene id CI01000119_02031570_02032574
gene name SOX1A, SOX1B, SOX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000119
NCBI id null
chromosome length 2769458
location 2030668 ~ 2032731 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000119_02031570_02032574.mRNA
ATCCATCATCTGTTTGGATTGTACCTCTGTCTGCTGTTCGAGTGGCCTCTTTTGTTATTAGGAGGTTCTACGCGTGTGCGCCTGCCAGCGAACGGGGACGTGTGAATGTTTCTGTGTGTGAGCTGAGTAAGTTAAAGCCGGGTGAATGTATAGCATGATGATGGAAACGGACTTGCATTCTCCAGGAGCCCAGACTAACACAAACACGGGCCACACGGGACCCAACAGCAAAGTTAACCAAGACCGCGTCAAGAGACCCATGAACGCGTTTATGGTGTGGTCTCGGGGTCAGCGCAGAAAAATGGCTCAGGAGAATCCAAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGAGCGGAGTGGAAAGTCATGTCCGAGGCGGAAAAGCGACCCTTCATTGACGAGGCGAAAAGACTGCGCGCCATGCACATGAAGGAGCATCCGGATTACAAGTACCGACCCCGGAGGAAGACCAAGACTCTGCTCAAGAAGGACAAGTACTCTTTGGCGGGTGGCCTGCTCGCTGGATCAGGAGGCGGAGGCGGCGTGGGGCTGGGAATGGGTGCAGCGGGGGTCGGGCAGAGGTTAGAGAGTCCGGTGGGTCACGGCGGCAGCACCGCGGCGAGCTACGCGCACATGAACGGCTGGACCAACGGCGCGTACTCAGGCCAGGTGGCGGCTGCCGCGGCTGCAGCCGCAATGATGCAGGAGGCTCAGCTCGCCTACAGTCAGCACCCAGGCAGCGGAGCGCATCACCACCACGGGCACCACCACCATCCGCACAACCCCCAGCCTATGCACCGCTACGAAATGACGGCTCTCCAGTACAGCCCCATCTCAAACTCTCAGAGCTACATGAGCGCCTCTCCGTCAGGCTATGGGGGAATATCCTACACGCAACATCAAAACTCCAGCGTGGCTTCATCTGGGGCCATCGGCTCGCTGGGCTCGCTGGTGAAATCGGAGCCGAGCGTAAGCCCTCCCGTTACCGCTCACTCTCGAGCCCCTTGTCCCGGAGACTTGCGAGAGATGATAAGCATGTATTTACCGACGGCGGAGGCAGGGGACCCGTCCGTTCAGAGCAGACTTCACGCTGTACCGCAGCACTATCAAAGTTCCACGACGAGCGTAAACGGAACCGTTCCACTGACACACATATGAAAAGATTTGCAACTACGCATTCAGACTCAAATAACCAAATATGTACCTCTTTTAGAGCATAACTACCTTTTTTTGTACAGAATGTCTGTTCTTGTAAATTTGAAGGTGATATTATTTAAATATAATACTTAAACTGAAGGGTGTCCTGGGGATGTTGTCTGAATAATTTGTCCGAAATGACACCATATGCGTGAGCTTTACACATTTGCGAGGGATTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTGTGTGTATGAGAGAGATGGTACTATGTTTGCGACATGAAAAAGAGTGGGTGCTACAGTGTATAGTCAAAAAACAATGTTTTTAAAGTTTTCTAAGATTTTTCTCTATCCCACTTTGATTTGTCAACACGTGAGATGCTGTATTTGCTCTATTCCTTATTTGTTTGTTGTATTTTTTCCCTTGTACATTGTGAATATATTACAGAGAAGATTGATACACAAATCTGTAAATATAATTCGGATTTGCCAGGAAAAAGAGGAAACGTTTTGCGTTGATGTGAGAAGAATAAA

Function

symbol description
sox1b Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of DNA-binding transcription factor activity. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Is expressed in central nervous system; forebrain neural keel; and solid lens vesicle. Orthologous to human SOX1 (SRY-box transcription factor 1).
sox1a Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of DNA-binding transcription factor activity. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including forebrain neural keel; lens placode; nervous system; neural plate; and solid lens vesicle. Orthologous to human SOX1 (SRY-box transcription factor 1).
sox1 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including interneuron migration; regulation of oligodendrocyte differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cellular response to leukemia inhibitory factor; generation of neurons; and lens morphogenesis in camera-type eye. Predicted to be part of chromatin.

GO:

id name namespace
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000119_02031570_02032574.mRNA True 2064 mRNA 0.41 1 2030668 2032731

Neighbor

gene id symbol gene type direction distance location
CI01000119_02021108_02028909 NA coding downstream 417 2019927 ~ 2030251 (-)
CI01000119_01892604_01918504 TUBGCP3 coding downstream 110157 1891370 ~ 1920511 (-)
CI01000119_01869030_01889412 NA coding downstream 140977 1868936 ~ 1889691 (-)
CI01000119_01845166_01848192 NA coding downstream 182476 1844462 ~ 1848192 (-)
CI01000119_01812207_01836473 MCF2L, MCF2LA coding downstream 193631 1811920 ~ 1837037 (-)
CI01000119_02152337_02178892 ARHGEF7B, ARHGEF7 coding upstream 118569 2151300 ~ 2179069 (-)
CI01000119_02181296_02203683 EIF5B coding upstream 147719 2180450 ~ 2204357 (-)
CI01000119_02251996_02268403 MAP2K7 coding upstream 218389 2251120 ~ 2269424 (-)
CI01000119_02271227_02288898 PKN1, PKN1A coding upstream 237827 2270558 ~ 2288898 (-)
CI01000119_02329804_02341488 NA coding upstream 296849 2329580 ~ 2341488 (-)
G337889 NA non-coding downstream 252326 1776903 ~ 1778342 (-)
G337793 NA non-coding downstream 295164 1730629 ~ 1735504 (-)
G337815 NA non-coding downstream 326204 1703309 ~ 1704464 (-)
G337880 NA non-coding downstream 328419 1702029 ~ 1702249 (-)
G337878 NA non-coding downstream 330516 1699933 ~ 1700152 (-)
G337973 NA non-coding upstream 38759 2071490 ~ 2072579 (-)
G337983 NA non-coding upstream 101754 2134485 ~ 2134786 (-)
G337984 NA non-coding upstream 103115 2135846 ~ 2136050 (-)
G338005 NA non-coding upstream 354129 2386860 ~ 2387901 (-)
G338008 NA non-coding upstream 355352 2388083 ~ 2388361 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000580 sox1b coding NC_007112.7 CM002885.2 46194333 ~ 46196107 (+)
bowfin (Amia calva) AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding CM030128.1 CM030128.1 11392389 ~ 11393405 (+)