XLOC_000118 (elfn1b)


Basic Information

Item Value
gene id XLOC_000118
gene name elfn1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9557212 ~ 9712302 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000216
GTGAGAAGTACAGGCACTCTGGCTCAGAGCGGGATAAACACGGGACGAAGGTGGAAAAAATACCAACTCTCCATCACGCGTTAGACTCGAATTAATGACCGTGTGCTCCTCCGGACCGGGAGATTTGTAGCTGCCGCAGTGGTTTGTTCCAGCAGCGGGCATTTGCTGCTTGGTACCCGGACGCGTCCGCAGTGCTGGATTTTGCAGTTCGGAAGTGGATGAGATCTACAGACCAACACTCTCCTATCACAAAACCTTGTCGTCATAAAGAGAGACCAGCGAGCGGCACACATTGACAACTTCTTCTAAACGTTGATTTCAGCAGCGTGGACAACATCTAGATGTTCGTTAATCAGTTTTTCACTGCAAAGatttTCTCAAAGGACTTCTGATTGGATACCAGAGGAAGTGGGAGAACCAATCAGATCTCTGCATGTGTGTGGGATGCAATATGAAAATGTGGTCATGAGCGGGTATCTGATGAGAAATGAGGCCCTCGGAAAAAACAAGCGCTTCCTGCCCTGTGGGAGGTTATGTGTGGGAATGCTCAGATACTCTATCTGAAAAGCTTTCGCACATAAACAAGACTCTGGTCATATATGAAGCCTCCTTTCCAGTGTGACAAGACACAAAACGCTCTTTGAGAAGAGAAAAATCAAGCTGATAtccctaataaaacacaacaatcaTCCATGTGATTTCAACACTGCATCCAGTTACAAGCAACGTTGCATCTGTTGTTAAAGGTCTGTGTATTCAAAGAAAACACCTGCTGAAGCTATGACTGAAGCACAGATGTCCATTTCGTCTGGGTCTAGTGGACATGGAGGAGGAATGGTGACCAGTGCCTTACTTTGCTGGGCTGTGGCTCTTGTGTTCCTCTCACTGACAAGGGTGCCTGTTGTCCAGGGTGATTGCTGGCTGATTGAAGGGGAAAAGGGATTTGTGTGGTTGGCAATTTGCAGCCAGAACCAGCCCCCCTATGAAAACATCCCAATGCATATTAACAGCACAATTGTTGACCTGCGCCTCAATGAGAACAAGATTCGAAGCATCCATTTTTCTTCCCTTAGCCGCTTTGGCAATCTCACATACCTGAATCTAACAAAGAATGACATCTCTTACATAGAAGATGGGGCTTTCTCTGCTCAATTTAATCTCCAAGTGCTGCAGATTGGCTTTAACAAAATGAGGAACTTGACTGAGGGAATGTTAAGAGGTTTGGGACGCTTACAGTACCTCTATCTTCAGGCAAACCTGATCGAGACCGTCACAGCCAATGCCTTTTGGGAATGTCCTGCGATAGAAAACATCGACCTCTCCATGAACAGGATTCAGCAGCTTGATGGCGCTACATTCCGTGGTCTATCAAAGCTTACGACGTGCGAGCTCTACGCTAACCCTTTCAGCTGCTCATGTGAGCTGTTGGGATTCTTGCGCTGGCTTGTTGCGTTCCCAAACCGGACAAGTGAGAGGATGGCGTGTGATACACCTGCCGGCTTTTCAGGCTACAGCCTCTTGAGTCAGAACCCTAGGATGCCCAGATATCGAAATGCTTTCCATGCCCTCTCTTCAGTCTGCACCGATGACAATGTGACTCCGTATCTTCATGGATCTCCAGATGGAGGCATTCCAACGAGGTTGCCTGATTTGAGTCCTTGCGGACTGGATGACTGTTCCTCTGGGACATTTCCAGAGGAGACAATTAGCATCAGCCCCACCTTTCTGGATTCAGATGCTCGTCCAATAATGAAACTAAAAGAAGTTACTCACACAAGTGCAGTAATCACCATCCAGATTCCTAATCCTTTTCGCAAAATGTACATCCTTGTCCTCTACAATAACAGCTTCTTCACTGACATCCAAAACCTGAAAAGCCAGAGAGAAGAGATTGAGTTACAAAACCTTAAATCTCACACCAACTACACATACTGTGTGGCATCCATTCGTAACTCCTTAAGATTTAACCACACTTGTCTGACCATCTCGACAGGACCAAGGACATTGCAAGAACGTGTGGTAAATGACTCAACTGCCACTCATTACATTATGACCATCCTTGGGTGTCTCTTTGGGATGCTCATCGTGCTGGGTGTAGTTGTCCATTGCCTGAGAAAGCGCAAAAAGCAAGACGAGCCAAAGAGCAAGAAGCTGGAAAAGATGAAAAGAAACTTGATTGAGATGAAATACGGAACCGAGCTGGAACAAGGGACTATATCACAgctgtcacaaaaacaaattctgTCCGCTGGTGAAACAGTACAAAGGATGCCATACTTGCCAGCTGCCAGTGACACAGATCAGTATAAGATGCAAGAGATCTCTGGAACGCCGAAGACTACAAAGGGGAATTACATGGAAGTGAGATCAGAGCAACCAGAGCGGAGCATAAGGGAATGCAGCGTTCCTCCATCGGAAACCAGCCAGGGATCTGTTGCTGAGATATCCACCATTGCAAAAGAAGTGGACAAAGTAAACCAGATCATCAACAACTGCATAGATGCACTCAAGTCTGATTCAACATCATTCCAGACTGCAAAATCTGGCGCTGTGTCGACAGCTGAGCCACAGTTAGTTCTCATATCAGAACATCCCCCGGGCAAGTCTGGTTTTCTGTCCCCAGTGTACAAAGGAGGCTACCATCATCCCCTACAGAGGCACCACAGCATGGATGCTCCACAAAAGCGTGCAAGCACATCTTCGAGTGGTTCACTCCGCAGTCCTCGCTCTTTTCGCTCCGAAGGAGCTTACAGATCAGAGTCCAAATACATTGAGAAGGCATCTCCGCAGGATGAGTCAGGAATCATCACAGTCACTCCAGCTGCTGCAATTTTGAGGGCAGAGGCAGAGCGGATTCGGCAGTACAGCGAGCACAGGCACTCCTACCCTGGTCCCCACCATATAGAGGAGTCAATAGAGGTGTCAGGGAGTCGGAAATCGTCCATTCTGGAGCCGCTGACGCGCTCCAGACCCAGGGAGTTGTCCTATTCGCAGCTCTCACCACAGTACCACAACCTGAGTGGCTATTCCAGTCCCGAGTACAGCTGCAGGCCTTCTCTTAGCCTGTGGGAACGTTTTAAACTACACCGCAAGCGTCACAGGGATGAGGAAGAGTACATTGCTGCAGGCCATGCATTGAGGAGGAAAGTACAGTTTGCCAAAGATGAGGACCTACATGACATTCTAGACTACTGGAAAGGAGTCTCTGCTCAGCAGAAGTCATGATTGCCATTTTTATAGCCCATCCAATTAAAGAAGACTGCACAAGTCTCTGGACCAAACCAGCCAGTATCAACGATTAAGTGACAAGTCAGCACTCACTTTTAGAGATATAGCTTAGAAGTATTGCTAGGTCTTTTCATTCTGTTTGAGAATGAAAAAGATTCTGTAGATCTCGCAGTGAGTGTACGTGCCAAGTGGTAAGAATAGCAAACTTTTAACAGTATTAACCTCAACTCAAcatttgatttttatatattGGAAATAACAATAAACTACTATTATATTATCACCCTCATGATCATCATGACCATCATTGATTAGTAGTATTACTGTTAAGATtgattcttcttattattattacagttaatCTTTGGTTATCGCATGGCCGTGTCCTGTGACAGTATTGACTGTTGTGTACTTGGAAAACATTCAACTCAAAATGTCTGCCGAACACTGTTCTCCCCAACCTTAGATTTTTATACAGACTGTGCAACTTTGAAAatgctctttttttcttctttagcgACTGTTCAATGGACAACTGCTGAATTTGCTACAGAAGCACACATCTACTGGATTTTAATAGAATGacttttcaaagaaaaaaaactgcttctCTTAATGCTTTCTCCattctttttttgtaaagtttacattttcaaacatacGACGAATGTTTCAAGTCCTTAAGACTTATACCTGCAGCCACTGCGATGCAGGGAGAACTGTTTTTGGCTTTCTATGGTTTTCTTTCATTAACAGATCTTCAAGCAGTGCTACTGAGAAAACTGACTACACAAACTCAACACAAGTCCTGCAAACTGGAGAATGAATGTACAGTGTGTGAAAACTATTTTTCTCTGACATCGGTTTTAGAATATTTGGGGCTTAGTCCGATTTAAACCCACTTCGATTCTTGTTTGCAAGACCTTCAGAGATATGTCTATCTCAGTCAAAGATATTGCTACCACATGCCTACTTTAAACCACTGTGAATCCCAAGACCTTGCTTAATCAGccctgggtttttttttttttttactgaaatttaACAGAGCTAT
>TCONS_00000217
ATGACTGAAGCACAGATGTCCATTTCGTCTGGGTCTAGTGGACATGGAGGAGGAATGGTGACCAGTGCCTTACTTTGCTGGGCTGTGGCTCTTGTGTTCCTCTCACTGACAAGGGTGCCTGTTGTCCAGGGTGATTGCTGGCTGATTGAAGGGGAAAAGGGATTTGTGTGGTTGGCAATTTGCAGCCAGAACCAGCCCCCCTATGAAAACATCCCAATGCATATTAACAGCACAATTGTTGACCTGCGCCTCAATGAGAACAAGATTCGAAGCATCCATTTTTCTTCCCTTAGCCGCTTTGGCAATCTCACATACCTGAATCTAACAAAGAATGACATCTCTTACATAGAAGATGGGGCTTTCTCTGCTCAATTTAATCTCCAAGTGCTGCAGATTGGCTTTAACAAAATGAGGAACTTGACTGAGGGAATGTTAAGAGGTTTGGGACGCTTACAGTACCTCTATCTTCAGGCAAACCTGATCGAGACCGTCACAGCCAATGCCTTTTGGGAATGTCCTGCGATAGAAAACATCGACCTCTCCATGAACAGGATTCAGCAGCTTGATGGCGCTACATTCCGTGGTCTATCAAAGCTTACGACGTGCGAGCTCTACGCTAACCCTTTCAGCTGCTCATGTGAGCTGTTGGGATTCTTGCGCTGGCTTGTTGCGTTCCCAAACCGGACAAGTGAGAGGATGGCGTGTGATACACCTGCCGGCTTTTCAGGCTACAGCCTCTTGAGTCAGAACCCTAGGATGCCCAGATATCGAAATGCTTTCCATGCCCTCTCTTCAGTCTGCACCGATGACAATGTGACTCCGTATCTTCATGGATCTCCAGATGGAGGCATTCCAACGAGGTTGCCTGATTTGAGTCCTTGCGGACTGGATGACTGTTCCTCTGGGACATTTCCAGAGGAGACAATTAGCATCAGCCCCACCTTTCTGGATTCAGATGCTCGTCCAATAATGAAACTAAAAGAAGTTACTCACACAAGTGCAGTAATCACCATCCAGATTCCTAATCCTTTTCGCAAAATGTACATCCTTGTCCTCTACAATAACAGCTTCTTCACTGACATCCAAAACCTGAAAAGCCAGAGAGAAGAGATTGAGTTACAAAACCTTAAATCTCACACCAACTACACATACTGTGTGGCATCCATTCGTAACTCCTTAAGATTTAACCACACTTGTCTGACCATCTCGACAGGACCAAGGACATTGCAAGAACGTGTGGTAAATGACTCAACTGCCACTCATTACATTATGACCATCCTTGGGTGTCTCTTTGGGATGCTCATCGTGCTGGGTGTAGTTGTCCATTGCCTGAGAAAGCGCAAAAAGCAAGACGAGCCAAAGAGCAAGAAGCTGGAAAAGATGAAAAGAAACTTGATTGAGATGAAATACGGAACCGAGCTGGAACAAGGGACTATATCACAgctgtcacaaaaacaaattctgTCCGCTGGTGAAACAGTACAAAGGATGCCATACTTGCCAGCTGCCAGTGACACAGATCAGTATAAGATGCAAGAGATCTCTGGAACGCCGAAGACTACAAAGGGGAATTACATGGAAGTGAGATCAGAGCAACCAGAGCGGAGCATAAGGGAATGCAGCGTTCCTCCATCGGAAACCAGCCAGGGATCTGTTGCTGAGATATCCACCATTGCAAAAGAAGTGGACAAAGTAAACCAGATCATCAACAACTGCATAGATGCACTCAAGTCTGATTCAACATCATTCCAGACTGCAAAATCTGGCGCTGTGTCGACAGCTGAGCCACAGTTAGTTCTCATATCAGAACATCCCCCGGGCAAGTCTGGTTTTCTGTCCCCAGTGTACAAAGGAGGCTACCATCATCCCCTACAGAGGCACCACAGCATGGATGCTCCACAAAAGCGTGCAAGCACATCTTCGAGTGGTTCACTCCGCAGTCCTCGCTCTTTTCGCTCCGAAGGAGCTTACAGATCAGAGTCCAAATACATTGAGAAGGCATCTCCGCAGGATGAGTCAGGAATCATCACAGTCACTCCAGCTGCTGCAATTTTGAGGGCAGAGGCAGAGCGGATTCGGCAGTACAGCGAGCACAGGCACTCCTACCCTGGTCCCCACCATATAGAGGAGTCAATAGAGGTGTCAGGGAGTCGGAAATCGTCCATTCTGGAGCCGCTGACGCGCTCCAGACCCAGGGAGTTGTCCTATTCGCAGCTCTCACCACAGTACCACAACCTGAGTGGCTATTCCAGTCCCGAGTACAGCTGCAGGCCTTCTCTTAGCCTGTGGGAACGTTTTAAACTACACCGCAAGCGTCACAGGGATGAGGAAGAGTACATTGCTGCAGGCCATGCATTGAGGAGGAAAGTACAGTTTGCCAAAGATGAGGACCTACATGACATTCTAGACTACTGGAAAGGAGTCTCTGCTCAGCAGAAGTCATGA

Function

symbol description
elfn1b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain and neurons. Used to study schizophrenia. Orthologous to human ELFN1 (extracellular leucine rich repeat and fibronectin type III domain containing 1).

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-21 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain and neurons. Used to study schizophrenia. Orthologous to human ELFN1 (extracellular leucine rich repeat and fibronectin type III domain containing 1).

Ensembl:

ensembl_id ENSDARG00000074372

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000216 False 4282 mRNA 0.45 4 9557212 9712302
TCONS_00000217 True 2445 mRNA 0.48 1 9708801 9711245

Neighbor

gene id symbol gene type direction distance location
XLOC_000117 uncx4.1 coding upstream 263097 9290103 ~ 9294115 (+)
XLOC_000116 BX323038.1 coding upstream 271861 9277846 ~ 9285351 (+)
XLOC_000114 chtf18 coding upstream 330008 9199031 ~ 9227204 (+)
XLOC_000115 chtf18 coding upstream 335596 9218648 ~ 9221616 (+)
XLOC_000113 plk1 coding upstream 395369 9153141 ~ 9161843 (+)
XLOC_000119 pmm2 coding downstream 148079 9860381 ~ 9866856 (+)
XLOC_000120 NA coding downstream 174653 9886955 ~ 9914630 (+)
XLOC_000121 NA coding downstream 234362 9946664 ~ 9951873 (+)
XLOC_000122 pdia2 coding downstream 242187 9954489 ~ 9966195 (+)
XLOC_000123 si:dkeyp-75b4.8 coding downstream 254082 9966384 ~ 9982114 (+)
XLOC_000111 NA non-coding upstream 424722 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 580790 8967479 ~ 8976422 (+)
XLOC_000105 NA non-coding upstream 591273 8950874 ~ 8965939 (+)
XLOC_000100 NA non-coding upstream 966576 8587230 ~ 8590636 (+)
XLOC_000133 AL935188.1 non-coding downstream 651418 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 749742 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 905222 10617524 ~ 10617930 (+)

Expression


Co-expression Network