G371650


Basic Information

Item Value
gene id G371650
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000169
NCBI id null
chromosome length 1065687
location 829875 ~ 830597 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU424416
GTGTGACAAAAAGTTGCAATAATCTCTTAAATGGTTTTATTCCATAGAGGAAACAAGCTTCCATAGAATACTGAAGTGGTCCAACTAAACATCAACTATATAACTACAAGTTTCATTTGCAACAAGCTAACTCAGTTAGCAGCAGCAGCATTAGGTAAGAGACGGGCTGTGAGTCACCTTAGTCAGCTATGTGATTCATGTTAAACCTTGCGAGGACGCGCTACTCCTTTAACCTCTCACCCACTTCTATTCTTACTGCCCTGGGGCAAATCGTCCTGCCTTCGCTTAGACACAGACACAGCATGAAACCCTGTAAACTCGTGCATGACTACATACAAACAACACAGAGTTAAAGAGCTAAAGCACTACAAAACCATTCAATATGCTTTCATTCACAATCAGACAGAAAATACTAAATAATTCTTTGCGTTCTGTCAAAAGTAATACGGTTTCTTCAACCCCTCAGCACAGACAAAAACACATTTGACTTGAAAACTGTCCTTCATCACACAGTATAGCTGCTGACAGCAAAGTCAAACCATCTTAGCTAGGACCAACACAAAACACACACACACACTTCACCTGAGACTAGCAGAATAAGGTGCGTCCAAACGTGGGTACCGCTGTGTCTCCTCCACCCACAAAATCACTGCAGCAGGAAGGTGAAATGACCAGGTGAAGGTAACAACAGTTCAATCTGAACAACTACAGGTTGAGTTTATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU424416 True 723 lncRNA 0.42 1 829875 830597

Neighbor

gene id symbol gene type direction distance location
CI01000169_00801511_00803912 NA coding downstream 25963 800056 ~ 803912 (-)
CI01000169_00769848_00794717 F8 coding downstream 34499 769609 ~ 795376 (-)
CI01000169_00708005_00711176 NA coding downstream 118515 706857 ~ 711649 (-)
CI01000169_00679772_00703207 SEC24B coding downstream 126668 678896 ~ 703207 (-)
CI01000169_00659765_00662464 HOPX, HOP coding downstream 167411 659458 ~ 662710 (-)
CI01000169_00858567_00865583 NA coding upstream 27474 858071 ~ 865583 (-)
CI01000169_00885977_00886294 NA coding upstream 54923 885520 ~ 886475 (-)
CI01000169_00895811_00905628 ARL10, ARL3, ARL3L1, ARL3L2 coding upstream 64727 895324 ~ 905628 (-)
CI01000169_01038714_01039940 ADRA2DA coding upstream 208063 1038660 ~ 1040417 (-)
CI01000169_01049597_01056495 NA coding upstream 218680 1049277 ~ 1056794 (-)
G371647 NA non-coding downstream 5168 824492 ~ 824707 (-)
G371641 NA non-coding downstream 18499 811074 ~ 811376 (-)
G371639 NA non-coding downstream 19642 810029 ~ 810233 (-)
G371638 NA non-coding downstream 20112 809554 ~ 809763 (-)
G371454 NA non-coding downstream 21606 755064 ~ 808269 (-)
G371651 NA non-coding upstream 1736 832333 ~ 844044 (-)
G371653 NA non-coding upstream 6580 837177 ~ 837782 (-)
G371654 NA non-coding upstream 11792 842389 ~ 843380 (-)
G371655 NA non-coding upstream 14675 845272 ~ 846061 (-)
G371657 NA non-coding upstream 19568 850165 ~ 852249 (-)
CI01000169_00415801_00420215 NA other downstream 398672 415328 ~ 420254 (-)

Expression


Co-expression Network