G371654


Basic Information

Item Value
gene id G371654
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000169
NCBI id null
chromosome length 1065687
location 842389 ~ 843380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU424420
ATTTTTCCACACCTAATTCTGAAACCCACATCAGATGTGCATTTTTGTCAGTTCTGACGCATGCGCAAAGTTTTCGAGCATGTTTAGGCCCTCAAAAATGCAATTCATGGAGAAGAAGAAGAAGAAACGGAGCAATTTCAATAATGCCCTCACACCATCGGTGCTCAGGCCCGAAATATGAACAAAAACTATAATAGTTTATTAATGATAACACTGACACACACACACCTCTCCCTCGCCGTTAGCAGCAAAATAGTTCATCTCTGCCACATCCACCAGTTTCAAGTCATTACAGGGCAGAGGAGCTCCAACATGACCTGCAATCCAGTCTCCTGGTATTGTAGTTGTGCTGCCGGCGGTGCATTCAGTCTGTCCGTATCCTTCATAAAACTGGCAGCCCAACGCAGCGCGCAGGAAGGTGAGAACAGGTGCTGAAATAGGTGCGGCTCCAGTCACCATCATTCGCACGCAACCGCCGACACTGGCCTGGACTTTCTTGAAGATGATCTTGTCCCATATACTGTCTCTCCTCATGATTCCGCTCATCATCTCGGCCTCTTTCCTCTTGAAGGCAAACTCCAGTATGCGTCTCTTCAGGGGACTGTTGGCCTGTCCGTAGATCTGCAGGAGGGTTTCACTACATTACTACTGCACTACACACTCTAACACATGGATGAGGTGAAAGATCACAGATCATACAGTGAGTTGCTGGGAATGGTTATGACATGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU424420 True 730 lncRNA 0.47 4 842389 843380

Neighbor

gene id symbol gene type direction distance location
CI01000169_00801511_00803912 NA coding downstream 38477 800056 ~ 803912 (-)
CI01000169_00769848_00794717 F8 coding downstream 47013 769609 ~ 795376 (-)
CI01000169_00708005_00711176 NA coding downstream 131029 706857 ~ 711649 (-)
CI01000169_00679772_00703207 SEC24B coding downstream 139182 678896 ~ 703207 (-)
CI01000169_00659765_00662464 HOPX, HOP coding downstream 179925 659458 ~ 662710 (-)
CI01000169_00858567_00865583 NA coding upstream 14691 858071 ~ 865583 (-)
CI01000169_00885977_00886294 NA coding upstream 42140 885520 ~ 886475 (-)
CI01000169_00895811_00905628 ARL10, ARL3, ARL3L1, ARL3L2 coding upstream 51944 895324 ~ 905628 (-)
CI01000169_01038714_01039940 ADRA2DA coding upstream 195280 1038660 ~ 1040417 (-)
CI01000169_01049597_01056495 NA coding upstream 205897 1049277 ~ 1056794 (-)
G371653 NA non-coding downstream 4607 837177 ~ 837782 (-)
G371650 NA non-coding downstream 11792 829875 ~ 830597 (-)
G371647 NA non-coding downstream 17682 824492 ~ 824707 (-)
G371641 NA non-coding downstream 31013 811074 ~ 811376 (-)
G371639 NA non-coding downstream 32156 810029 ~ 810233 (-)
G371655 NA non-coding upstream 1892 845272 ~ 846061 (-)
G371657 NA non-coding upstream 6785 850165 ~ 852249 (-)
G371665 NA non-coding upstream 28288 871668 ~ 873823 (-)
G371679 NA non-coding upstream 53319 896699 ~ 901942 (-)
G371668 NA non-coding upstream 75370 918750 ~ 931764 (-)
CI01000169_00415801_00420215 NA other downstream 411186 415328 ~ 420254 (-)

Expression


Co-expression Network