G371679


Basic Information

Item Value
gene id G371679
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000169
NCBI id null
chromosome length 1065687
location 896699 ~ 901942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU424446
ACTGTCACAAGCCGGGCTAGAACTCGGGTCTCTGGTGTGGTGGTTGAGATATCTGCCACAAGGCCACAGAGACTGTGATGTTGGACCCAAACGAAACACTCAAGGCAGAACTCCAGGCAATGTAGATTTAATAAAAAAAAAAGTATTTTCAAGCAAAAATCCAACAAAAGTTCTTCTCAGACAGAGGTATTAATAACATAAGAGATAATGGAAAAAACCACATGGGAAAATAAAAACTCCACGAGGGGAGAAAACAAAACTAGAGAACATTAATAACCAAATAACTCAAAACACCTTACTTGAGATAGCTTGGAAAGACTTGGAGAGACAAAGCAGGAAGCACGCGGCCAAGACTCAAAAACCAAGTGAGGAACAAGGGGAAAAAACACAACTAAAATACCCTAGGAGAAACAAGGCACAGGTGACCTGGATAATGCTAACAAGGATCCATGTGGAAAAACTAAGGCAGAGGGGAACACAGGGGACCTCTAGAGGCATGGAGACAAACTACAGGAGGTAGGATGCTGACAG
>TU424448
ACTGTCACAAGCCGGGCTAGAACTCGGGTCTCTGGTGTGGTGGTTGAGATATCTGCCACAAGGCCACAGAGACTGTGATGTTGGACCCAAACGAAACACTCAAGGCAGAACTCCAGGCAATGTAGATTTAATAAAAAAAAAAGTATTTTCAAGCAAAAATCCAACAAAAGTTCTTCTCAGACAGAGGTATTAATAACATAAGAGATAATGGAAAAAACCACATGGGAAAATAAAAACTCCACGAGGGGAGAAAACAAAACTAGAGAACATTAATAACCAAATAACTCAAAACACCTTACTTGAGATAGCTTGGAAAGACTTGGAGAGACAAAGCAGGAAGCACGCGGCCAAGACTCAAAAACCAAGTGAGGAACAAGGGGAAAAAACACAACTAAAATACCCTAGGAGAAACAAGGCACAGGTGACCTGGATAATGCTAACAAGGATCCATGTGGAAAAACTAAGGCAGAGGGGAACACAGGGGACCTCTAGAGGCATGGAGACAAACTACAGGAGGTAGGATGCTGACAG
>TU424450
ACTGTCACAAGCCGGGCTAGAACTCGGGTCTCTGGTGTGGTGGTTGAGATATCTGCCACAAGGCCACAGAGACTGTGATGTTGGACCCAAACGAAACACTCAAGGCAGAACTCCAGGCAATGTAGATTTAATAAAAAAAAAAAAAGTATTTTCAAGCAAAAATCCAACAAAAGTTCTTCTCAGACAGAGGTATTAATAACATAAGAGATAATGGAAAAAACCACATGGGAAAATAAAAACTCCACGAGGGGAGAAAACAAAACTAGAGAACATTAATAACCAAATAACTCAAAACACCTTACTTGAGATAGCTTGGAAAGACTTGGAGAGACAAAGCAGGAAGCACGCGGCCAAGACTCAAAAACCAAGTGAGGAACAAGGGGAAAAAACACAACTAAAATACCCTAGGAGAAACAAGGCACAGGTGACCTGGATAATGCTAACAAGGATCCATGTGGAAAAACTAAGGCAGAGGGGAACACAGGGGACCTCTAGAGGCATGGAGACAAACTACAGGAGGTAGGATGCTGACAG
>TU424452
ACTGTCACAAGCCGGGCTAGAACTCGGGTCTCTGGTGTGGTGGTTGAGATATCTGCCACAAGGCCACAGAGACTGTGATGTTGGACCCAAACGAAACACTCAAGGCAGAACTCCAGGCAATGTAGATTTAATAAAAAAAAAAGTATTTTCAAGCAAAAATCCAACAAAAGTTCTTCTCAGACAGAGGTATTAATAACATAAGAGATAATGGAAAAAACCACATGGGAAAATAAAAACTCCACGAGGGGAGAAAACAAAACTAGAGAACATTAATAACCAAATAACTCAAAACACCTTACTTGAGATAGCTTGGAAAGACTTGGAGAGACAAAGCAGGAAGCACGCGGCCAAGACTCAAAAACCAAGTGAGGAACAAGGGGAAAAAACACAACTAAAATACCCTAGGAGAAACAAGGCACAGGTGACCTGGATAATGCTAACAAGGATCCATGTGGAAAAACTAAGGCAGAGGGGAACACAGGGGACCTCTAGAGGCATGGAGACAAACTACAGGAGGTAGGATGCTGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424446 False 531 lncRNA 0.43 2 896699 901942
TU424448 False 531 lncRNA 0.43 2 896699 901942
TU424450 False 534 lncRNA 0.42 2 896699 901942
TU424452 True 531 lncRNA 0.43 2 896699 901942

Neighbor

gene id symbol gene type direction distance location
CI01000169_00885977_00886294 NA coding downstream 10224 885520 ~ 886475 (-)
CI01000169_00858567_00865583 NA coding downstream 31116 858071 ~ 865583 (-)
CI01000169_00801511_00803912 NA coding downstream 92787 800056 ~ 803912 (-)
CI01000169_00769848_00794717 F8 coding downstream 101323 769609 ~ 795376 (-)
CI01000169_00708005_00711176 NA coding downstream 185339 706857 ~ 711649 (-)
CI01000169_01038714_01039940 ADRA2DA coding upstream 136718 1038660 ~ 1040417 (-)
CI01000169_01049597_01056495 NA coding upstream 147335 1049277 ~ 1056794 (-)
G371665 NA non-coding downstream 22876 871668 ~ 873823 (-)
G371657 NA non-coding downstream 44450 850165 ~ 852249 (-)
G371655 NA non-coding downstream 50638 845272 ~ 846061 (-)
G371651 NA non-coding downstream 52655 832333 ~ 844044 (-)
G371668 NA non-coding upstream 16808 918750 ~ 931764 (-)
G371689 NA non-coding upstream 52375 954317 ~ 968234 (-)
G371695 NA non-coding upstream 86704 988646 ~ 989007 (-)
G371706 NA non-coding upstream 150502 1052444 ~ 1052765 (-)
CI01000169_00659765_00662464 HOPX, HOP other downstream 233989 659458 ~ 662710 (-)
CI01000169_00415801_00420215 NA other downstream 465496 415328 ~ 420254 (-)

Expression


Co-expression Network