CI01000201_00421647_00426906 (TBL1X)


Basic Information

Item Value
gene id CI01000201_00421647_00426906
gene name TBL1X
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 420586 ~ 426906 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000201_00421647_00426906.mRNA
ATTTAAAAGTGGCTATACTGTGTTATTTCATCAGTCAATGTTGAAAGATCTGGTGGTTGAAAGCTTTTTCAATTCTTGTGAGCGCCAGTTTTGTGCTAGAGTGAGTTTTGCGTGAGCGGAGAGATTCGGTGTGCGTTCTCGCATTACAATAATGCACTCTCAATAACTGTCATTAAAATGACACCGTAGAAACGGCCTCAAATGAACTATAAAAATGAAAAGAAAGTCGTGTCTGAAAGCTGCAGTCGTTTTTCTTTATTATTAGTTAAAATTAACGGAGAATGTCTCTCGTTTTTCCGTGGGTGCTCGGAATCGGCGCCTGTGCTCTCATTGGCTGTAGCTCGTCGCGACACGTGACACCACAGGATGTCGGCCGACAGCTCCAGATATTTAGCATGCTGGATGTTTTTCTGGTGTCGGGGACGCGTCAGCGAGCGTTTTTGACGCGTCGTTGAGTAGCTCACACATAAAAATTGGCGAGCTCGTTAACTTGCAAATCGGGCTTAAAATCTTGTAGTGTGAACTTGGCATTAGAGGTGCAACGGATCATGTTTCCATGACTCGAAAACCGTAATATGATCCGAACCGTGATTTTTGTGATCCTCCTTTATGACCACTAGGAGAGAAGCGATGCTGAAAAGGGTTTAGTTGTTAGAGGATCTTAATTTAGTTGACATTTACAGGGTCTGTAAATCTGTACCAAAACAACGACGCTAGAAATTACATCTGATAAACTGACGTTATGAGTGTAAACATTTTATGGCTTTGATTATGTGGGTTTTGTGTGTAAGGAAGTGTTAGCCTATGTTAGTATCATTGATATACTATTATATAATAAATGTCTATATAGTTGTTTTAATTTTTAATTTTAGTTTTATTTTTTTATTTGATTTTACATCAACTTAAACAGAAAAATGAGAAACTAGCTGAAAATAAGTTATTTTTTTTATTATGGTTTTCAGAATCCATTTGATTAATCAGAGTATAATGTAGTGTTGTCATGTTTCCTGTAGGGGGCGATCGTGAGCTCCAGTGTCGCTCATCCTCTGAGTTGAGCTAAGATGAGCATTACCAGTGATGAAGTCAACTTCCTGGTCTACAGATATCTGCAGGAGTCAGGTTTCTCTCATTCTGCATTCACGTTTGGCATTGAGAGTCACATCAGTCAGTCGAACATCAACGGGACTCTAGTGCCACCTGCTGCTCTCATCTCCATCCTGCAGAAAGGACTTCAGTATGTGGAGGCCGAGATCAGCATCAACGAGGATGGCACGGTGTTTGACGGTCGGCCGATAGAGTCTCTGTCGCTCATCGATGCCGTGATGCCAGACGTGGTTCACACCAGAAAGCAGGCGTTCAGAGACAAACTCGCCCAGCAACAGCAACAGCAGGCCGCCAGCTCCGCCAACTCGACAGCCGTTCAGTCCCACGCCACGAAGAACGGAGAAACCGCACTCAACGGAGACGAGAATGGCACCCACGCCCTCAATAACCATGTGGAGGCCATGGAGGTGGACGGTGAGGTCCAGATTCCTGCCAGTAAAGCCACGGTGTTGCGGGGTCACGAGTCAGAGGTCTTCATCTGTGCCTGGAACCCCGTCACTGACCTCTTGGCCTCAGGCTCTGGCGACTCGACGGCTCGCATATGGAACCTGAATGAGAACAGCAACAGCGGCTCCACTCAGCTGGTCCTGCGGCACTGCATCCGCGAGGGAGGACAGGACGTTCCCAGCAACAAGGACGTCACCTCATTAGACTGGAACAGCGACGGCACTCTCTTAGCAACTGGATCTTATGACGGATTTGCGAGAATATGGACAAAAGACGGTAATCTGAGCAGCACACTCGGACAGCACAAAGGACCCATATTTGCACTGAAGTGGAACAAGAAAGGCAACAGCATTCTGAGCGCTGGAGTCGATAAGACGACAATCATTTGGGACGCACACACAGGTGAAGCCAAGCAGCAGTTCCCCTTTCATTCTGCTCCAGCGCTGGACGTGGACTGGCAGAATAACACCACCTTCGCCTCCTGCAGCACTGACATGTGCATACACGTGTGTCGCCTAGGAAGTGAGCGTCCGCTCAAGACCTTTCAAGGGCACACGAACGAAGTGAACGCCATTAAATGGGACCCGTCGGGAATGCTGCTAGCTTCCTGTTCGGATGACATGACATTAAAGATCTGGAGTATGAAGCACGATTCATGTGTTCACAACCTTCAAGCGCACAACAAAGAGATCTACACCATCAAATGGAGCCCCACGGGCACCGGGAGCAACAGTCCCAACGCTAACATCCTGCTAGCCAG

Function

symbol description
tbl1x Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation and regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Human ortholog(s) of this gene implicated in Y-linked deafness 2 and congenital nongoitrous hypothyroidism 8. Orthologous to human TBL1X (transducin beta like 1 X-linked) and TBL1Y (transducin beta like 1 Y-linked).

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K04508 TBL1; transducin (beta)-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000201_00421647_00426906.mRNA True 2311 mRNA 0.47 11 420586 426906

Neighbor

gene id symbol gene type direction distance location
CI01000201_00394321_00396791 NA coding upstream 23591 394152 ~ 396995 (+)
CI01000201_00254354_00285896 NA coding upstream 134524 254115 ~ 286062 (+)
CI01000201_00124616_00139299 NA coding upstream 281059 124616 ~ 139527 (+)
CI01000201_00098073_00121392 NA coding upstream 298792 98017 ~ 121794 (+)
CI01000201_00066137_00066334 NA coding upstream 354139 63803 ~ 66447 (+)
CI01000201_00473896_00474283 NA coding downstream 46990 473896 ~ 474436 (+)
CI01000201_00547876_00556142 GPM6BB, GPM6B coding downstream 120970 547876 ~ 556255 (+)
CI01000201_00572895_00575129 TRAPPC2 coding downstream 145813 572719 ~ 575704 (+)
CI01000201_00576577_00577506 NA coding downstream 149671 576577 ~ 578901 (+)
G387838 NA non-coding upstream 14141 406213 ~ 406445 (+)
G387807 NA non-coding upstream 35484 340187 ~ 385102 (+)
G387804 NA non-coding upstream 65936 322822 ~ 354650 (+)
G387741 NA non-coding upstream 132054 240952 ~ 288532 (+)
G387739 NA non-coding upstream 151794 234891 ~ 268792 (+)
G387848 NA non-coding downstream 62499 489405 ~ 489702 (+)
G387849 NA non-coding downstream 71880 498786 ~ 527371 (+)
G387819 NA non-coding downstream 96003 522909 ~ 613385 (+)
G387862 NA non-coding downstream 161559 588465 ~ 589474 (+)
G387827 NA non-coding downstream 188025 614931 ~ 616868 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038197 tbl1x coding NC_007120.7 CM002893.2 55093078 ~ 55128839 (-)