CI01000201_00576577_00577506


Basic Information

Item Value
gene id CI01000201_00576577_00577506
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000201
NCBI id null
chromosome length 704500
location 576577 ~ 578901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000201_00576577_00577506.mRNA
ATGACATCCGTCTACACAGTATCCCACTCAAATCCCATAGGAGAGATCGAGATATATATATATATAAAACATCTGAATGCACAGAATTGCTTAAATTCAGGCAGTTCAGATTCAAGAGCGTCACCCAATGATACCAAGCCAGTGTTTACGACACGGCGAGGCGCCGCGAGGCTTCCGATGCAGGCTGACGGTGTCTGTGGGAATCAAATGCTCGTGTCGCTCCTCCAGAGCCAGAACTCTTCTGACGGCTTCCTCAAACGCAACCGCCACATTCGTCGAATCTTTCGCGCTGGTCTCGAAATACGGGTATCCGCCGCTCTCCCTGCACCACTCCTGAGCTTCCTCGCTCGTCACCTGCCTCTCCGTCACGTCCACCTTGTTGCCCAGAACCACGAACGGGAAGCTGTCGGGCTCCTTGACGTCGGCGTAGTAGATGAACTCTTTCCTCCAGTTGACCAGGTTGTGGAAGCTCTGGCTGTCGTCCACGCTGAAGGTCAGCAGGCAGCAGTCGGAGCCGCGGTCCTTGTTGAGGAACTCCACGCCAATGGTGTGAAAGAGGTGCGCGTCGAACTTGTTGGTGACGTAGCGGTTCATGAGCGAGCTCTTGCCCACGCCGCCGTCGCCCAGAAGAATGACTTTAAGAAGAGATGATTTGGATGACATGTTTGTTGTCCTCGTCCTGTGAACTGAAAGAGCATTTAAGACTTTCATTTATTGAAAATATGATCCTGCAAGACAATTTATGTGTTTAGAATAATTAAGGTTTTTCTGCTCACTAAAGTTGCATTTATTTGATCAAAAAATACAGTACAAATTCTGAAATATTATTCCATTGTAAATCAGCTGTTTTCTATGTGAATATATAGTAAAGTGTAATTTATATCCTAAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATTCTTCAGAAATCAGATATGATGATTTAAAAATAATAATAACACTTTTATTCATCAAGGACGCATTACATTGATCAAAAGTGACAGTAAATACGTTTATAATGTTATAAACGATTCTATTTCAAATAAATGCTGAACTTTCTATTCATCAAAGAATCCTGAAAAATAAAATGTATGACAGTTTCCACAAAAATATGACTGTTTTCAACATTGATAATAATCATAAATGTTTCTTGATCATCAAATCATCATATCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTACACTTTACTATATATTCACATAGAAAACAGCTGTTTAAAATTATAATAATATTTCACTGTTTTTACTGTATTTTTGATCAAATAAATGCAGCTTTGGTGGGAATATCTTGTCATCTTGGAGCTTTAGCGTTATGAATGTGAGTTACGGTAACATTTGGGAAACAAGGTTTCACCTACCTTCACTGCCTCAAATAATTCATCGTTCAAAATCTACAACAGAGAGTTGATCAATTAGAAATATGATCCCAAACTACTGGACTAGTAAAATTAAGATCTATGCAGTAGAATATTAATGTTAGTGTTTACACTTTACAATAATTCATGCTGAGATGCTTTACAGAAATACTTCACATTATTATTATTATTCATCATGCATATTGTTGCAGTACAATGTTGTTTTTATTTCTTAAAATGCAAAACCATAAAACCATTAAGAAGTTAATGGATGCCTAAACATAAAAATAATCAACACTTGTTGTAAAAACCCACATTAGTCAATCTTTACTACACTAGATAGATGCCAAGGTAACAGTATCCTCTGATATGGACAGTAATGTTGGACATAATGAAACATTCTGTGACTGAGCAGGGACAGACTCACGGTGGTTTCCTCTCAGCCGCTGGCCGTCGGTCATGTGCTCTTCTCTGTCCTGCATCACATGCAACAGTGTCCATTAGAATTCAGGCAACATGCAACACAGCCAAAGTTTAACCAGCTGGAATGGAGGCACGTACACAATGACGCACACACACACACACACACAAATGTGTGTGTGACTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000201_00576577_00577506.mRNA True 2046 mRNA 0.39 3 576577 578901

Neighbor

gene id symbol gene type direction distance location
CI01000201_00572895_00575129 TRAPPC2 coding upstream 873 572719 ~ 575704 (+)
CI01000201_00547876_00556142 GPM6BB, GPM6B coding upstream 20322 547876 ~ 556255 (+)
CI01000201_00473896_00474283 NA coding upstream 102141 473896 ~ 474436 (+)
CI01000201_00421647_00426906 TBL1X coding upstream 149671 420586 ~ 426906 (+)
CI01000201_00394321_00396791 NA coding upstream 179582 394152 ~ 396995 (+)
G387849 NA non-coding upstream 49206 498786 ~ 527371 (+)
G387848 NA non-coding upstream 86875 489405 ~ 489702 (+)
G387838 NA non-coding upstream 170132 406213 ~ 406445 (+)
G387807 NA non-coding upstream 191475 340187 ~ 385102 (+)
G387804 NA non-coding upstream 221927 322822 ~ 354650 (+)
G387862 NA non-coding downstream 9564 588465 ~ 589474 (+)
G387827 NA non-coding downstream 36030 614931 ~ 616868 (+)
G387876 NA non-coding downstream 44874 623775 ~ 623986 (+)
G387834 NA non-coding downstream 47047 625948 ~ 629376 (+)
G387857 NA non-coding downstream 65644 644545 ~ 645170 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037485 rab9a coding NC_007120.7 CM002893.2 54686686 ~ 54704498 (+)
bowfin (Amia calva) AMCG00014201 rab9a,LOC106581920 coding CM030128.1 CM030128.1 4290944 ~ 4291549 (+)