CI01000206_00385497_00393583 (R3HDM1)


Basic Information

Item Value
gene id CI01000206_00385497_00393583
gene name R3HDM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 385497 ~ 393583 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000206_00385497_00393583.mRNA
GATGGAGATCATGTTAAACTCTCCCAGACGTTTGACAAAGAAGAATCACCTCTCACTGCCAACGAGGATGATAAAGACAAAAGTGCCAACAAGCTTGAGAAACTGGAGAAAATGCCACACAAGATGCTGTCCAGAGATTCCAGTCAGGAATACACGGACTCCACTGGCATCGACCTGCACGAGTTCTTGGTGAACACACTGAAGAACAACCCCAGGGACCGAATGATGCTGCTGAAGCTGGAACAGGACATCCTCGACTTCATCAGTAATAATGAGAGTCAGAGGAGAAAGTTTCCGCCCATGACCTCCTATCATCGAATGCTCCTGCACCGAGTCGCTGCTTACTTCGGCTTAGACCACAACGTCGACCAAACCGGGAAATGTGTCATTATCAACAAAACCAGCAATACACGAATACCAGATCAGAAGTTTTCCGAACACATCAAAGACGACAAAACGGATGATTTCCAGAAGCGCTACATCTTAAAACGGGACAACTCCAGCGTAGACAAAGATGACAACATGATGCGTATGAAACTAAAAGACGACAGAAGAAGCAAGTCAATTGAGGAGCGTGAGGAGGAATATCAGAAAGCACGAGAAAGGATCTTCGCTGATGGTTTAGACACCTTCCCGCTGGATCAAAGGATTCAGGAGGACGAGATGTGTAACAACATACAGCAGAGACGGCAGATCTTCAGGCTGAAAGACGCCCGGTCGGCAAACAGCCGCCAAAGCAGCTCTGAGAACGAGGCCAAATATTCAGAGCCGCGTCCGTGGAGCAGCACGGATTCGGACAGCTCCAACCGCAACCTGAAGCCTGCCATGACCAAAGCCAGCAGCTTCAGCGGTATCCCGGTTCTGATCCGCGGCGACAGCTCCAGCAGCAGTAAGAGTGTGGGCCGGCTCTCAAAGACAGGTTCTGACTCTTGTAGTAGCGTAGGTTCGTCCACGGGTTCGCTCTCTCGATCCCAGCCTCCCTCTGCCGCCGCGGCTCTATCGCAGTCGATGGCCTACCCTGCTGTCAGCGCTAGCAGCGGCTTTTCCTATGAGCCGCCAGCGTCTACGGCTAGCCCTAGCTACTATTTGCTTCCTCTGGAAGCTGCGGGGATACCGGCCGGAAGTGTCCTGGTCAATCCGCATACAG

Function

symbol description
r3hdm1 Is expressed in forebrain; hindbrain; olfactory placode; and peripheral olfactory organ. Orthologous to human R3HDM1 (R3H domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000206_00385497_00393583.mRNA True 1147 mRNA 0.52 10 385497 393583

Neighbor

gene id symbol gene type direction distance location
CI01000206_00220974_00253610 NA coding upstream 131887 220974 ~ 253610 (+)
CI01000206_00178241_00202393 NA coding upstream 181912 178145 ~ 203585 (+)
CI01000206_00029745_00051502 NA coding upstream 333576 29745 ~ 51921 (+)
CI01000206_00021515_00023628 NA coding upstream 361864 21515 ~ 23633 (+)
CI01000206_00426915_00452327 NA coding downstream 33211 426794 ~ 453106 (+)
CI01000206_00475810_00481198 LCP1.S, LCP1 coding downstream 82227 475810 ~ 481222 (+)
CI01000206_00537962_00541275 NA coding downstream 144306 537889 ~ 542150 (+)
CI01000206_00571550_00572992 NA coding downstream 177967 571550 ~ 573289 (+)
CI01000206_00666815_00743152 SH3RF3 coding downstream 273232 666815 ~ 743152 (+)
G389684 NA non-coding upstream 41293 343788 ~ 344204 (+)
G389672 NA non-coding upstream 58331 326961 ~ 327166 (+)
G389658 NA non-coding upstream 89536 295483 ~ 295961 (+)
G389642 NA non-coding upstream 226588 157555 ~ 158909 (+)
G389597 NA non-coding upstream 239289 142077 ~ 146208 (+)
G389728 NA non-coding downstream 111934 505517 ~ 505814 (+)
G389753 NA non-coding downstream 117346 510929 ~ 511157 (+)
G389759 NA non-coding downstream 133514 527097 ~ 527755 (+)
G389764 NA non-coding downstream 161478 555061 ~ 555276 (+)
G389729 NA non-coding downstream 198722 592305 ~ 592887 (+)
G389767 NA other downstream 167562 561145 ~ 565669 (+)
G389725 NA other downstream 186248 579831 ~ 583898 (+)
G389774 NA other downstream 212752 606335 ~ 608065 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002454 NA coding CM030136.1 CM030136.1 15060847 ~ 15111866 (-)