CI01000206_00475810_00481198 (LCP1.S, LCP1)


Basic Information

Item Value
gene id CI01000206_00475810_00481198
gene name LCP1.S, LCP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 475810 ~ 481222 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000206_00475810_00481198.mRNA
ATGATCAACTTGTCTGTGGCGGACACTATCGACGAGAGAACCATCAATAAGAAGAAGCTCACGCCCTTCACTATCCAGGAGAATCTGAACCTCGCGCTGAACTCGGCCTCTGCTATTGGCTGCCATGTGGTGAACATCGGAGCAGAGGACCTGAAAGAGGGCAGGCAGCATTTAGTGCTGGGACTCTTGTGGCAAGTCATCAAAATTGGCCTGTTCGCTGACATCGAAATTAGTAGGAACGAAGCTCTGATCGCACTGCTCAGGGATGGAGAGAGTCTGGAGGATCTGGTCAAACTGTCTCCTGAGGAGCTGCTGCTGCGCTGGGCAAACTACCACCTGGAGGAGGCCGGATGTCCCAAAATTAACAACTTTAGCTCAGATATTAAGGACTCCAAGGCCTATTACAACATCCTGAACCAGGTGGCACCTAAAGGAGATGAAGAAGGCATCCCGGCCATCCCTATTGACCTGACTGGAATACGGGAAAAAGACGACCTGAAGAGAGCCGAGTGCATGCTGGAACAGGCCGACCGCCTCGGCTGCCGACAGTTCGTCACGGCCACAGACGTGGTCCGAGGAAACCCTAAACTCAATCTGGCCTATGTGGCCAATCTGTTCAACAAGTATCCTGCTCTGAAGAAGCCGGAAAACCAGGACATTGACTGGAGCTCTATTGAGGGAGAGACCAGAGAGGAACGCACCTTCAGAAACTGGATGAACTCACTGGGCGTTAATCCACGTGTCAATCATCTCTATGTGGATCTGGCTGATGCACTGGTGATCTTCCAGCTGTATGAAAAGATCAAGGTTCCTGTGGACTGGGACAGAGTGAACAAACCGCCGTACACCAAACTGGGCAGCAACATGAAAAAGCTGGAGAACTGTAACTACGCAGTGGAGTTGGGAAAGAAGGAGGCTAAATTCTCTCTGGTGGGAATCGCCGGACAGGATCTGAACGAAGGCAATCGCACGCTCACACTCGCTCTGCTCTGGCAGCTCATGAGGAGGTACACGCTGAACATCCTGGAGGATCTGGGCGACGGGCAGAAGGTCACTGACGACACCATCGTGACCTGGGTGAACGACGCGCTTGCACAAGCGGGCAAAGGCACCATCAGCGGCTTTAAAGACGGATCCATAAGCAGCAGCATGCCGGTCCTGGACCTGATTGACGCCATCCAGCCCGGCTCCATCCGCTACGACCTTCTCAAGACAGAAGACTTGACAGATGAAGAGAAACTCAATAACGCCAAGTACGCCATCTCCATGGCGAGGAAGATCGGAGCCCGTGTGTACGCGCTGCCGGAGGATCTGGTGGAGGTGAAGCCGAAGATGGTGATGACGGTGTTCGCCTGCCTCATGGCTCGAGGAATGAGACGAATCTAGAACCCATCATCCACTCAACTGAGA

Function

symbol description
lcp1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly and actin filament network formation. Located in cytoplasm. Is expressed in several structures, including eye; hematopoietic cell; hematopoietic system; mesoderm; and renal system. Orthologous to human LCP1 (lymphocyte cytosolic protein 1).

GO:

id name namespace
GO:0032432 actin filament bundle cellular_component

KEGG:

id description
K17276 LCP1, PLS2; plastin-2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000206_00475810_00481198.mRNA True 1410 mRNA 0.53 11 475810 481222

Neighbor

gene id symbol gene type direction distance location
CI01000206_00426915_00452327 NA coding upstream 22704 426794 ~ 453106 (+)
CI01000206_00385497_00393583 R3HDM1 coding upstream 82227 385497 ~ 393583 (+)
CI01000206_00220974_00253610 NA coding upstream 222200 220974 ~ 253610 (+)
CI01000206_00178241_00202393 NA coding upstream 272225 178145 ~ 203585 (+)
CI01000206_00029745_00051502 NA coding upstream 423889 29745 ~ 51921 (+)
CI01000206_00537962_00541275 NA coding downstream 56667 537889 ~ 542150 (+)
CI01000206_00571550_00572992 NA coding downstream 90328 571550 ~ 573289 (+)
CI01000206_00666815_00743152 SH3RF3 coding downstream 185593 666815 ~ 743152 (+)
CI01000206_00748542_00751311 NA coding downstream 267320 748542 ~ 751571 (+)
G389684 NA non-coding upstream 131606 343788 ~ 344204 (+)
G389672 NA non-coding upstream 148644 326961 ~ 327166 (+)
G389658 NA non-coding upstream 179849 295483 ~ 295961 (+)
G389642 NA non-coding upstream 316901 157555 ~ 158909 (+)
G389597 NA non-coding upstream 329602 142077 ~ 146208 (+)
G389728 NA non-coding downstream 24295 505517 ~ 505814 (+)
G389753 NA non-coding downstream 29707 510929 ~ 511157 (+)
G389759 NA non-coding downstream 45875 527097 ~ 527755 (+)
G389764 NA non-coding downstream 73839 555061 ~ 555276 (+)
G389729 NA non-coding downstream 111083 592305 ~ 592887 (+)
G389767 NA other downstream 79923 561145 ~ 565669 (+)
G389725 NA other downstream 98609 579831 ~ 583898 (+)
G389774 NA other downstream 125113 606335 ~ 608065 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038212 lcp1 coding NC_007120.7 CM002893.2 56251000 ~ 56272465 (-)