CI01000206_00666815_00743152 (SH3RF3)


Basic Information

Item Value
gene id CI01000206_00666815_00743152
gene name SH3RF3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 666815 ~ 743152 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000206_00666815_00743152.mRNA
CGTCAACGACAGCGTTGCGCACTGGAATCAAACATGGACGAGTCGTCGCTGCTGGATCTGTTGGAGTGTTCGGTGTGTCTGGAGCGGCTGGACACGAGCGCCAAAGTGCTGCCCTGTCAGCACACCTTCTGCCGCCGCTGCCTCGAGAACATCGTGAGCTCCAGACACGAGCTGCGCTGCCCGGAGTGCCGCATCCTGGTGGACTGCGCGGTCGACGATCTCCCGGCCAACATCCTGCTGGTCCGCTTACTGGACGGGATTAAACAGCGACCGAAGAACGGAGGAGGGAGGACGTCGCTGGTGGGATGCGCAGCCGGAGTGTCGGCTTCGCCCCCGGGGACAGCTGTGCGGGACCTGCCCGTCGCCACACGCAGCTCCCCGGTCAAGGTTTGTGCGGTTCTGGTTCGTGTTGTGCTGTGGATGAGTGAAGCGCACGTGCTGTTGTTTGCCAGAAGCTTCAGTACTTGGACAAACGTTCCTCAGCTGCCGTGTGGAAAAGCCCTTTACAGCTATGAGGGCAAAGAACCAGGTGACCTGAAGTTCAACAAAGGCGACATCATCATCCTGCGGCGGAAGGTGGACGAGAACTGGTTCCACGGCGAGTTGAACGGCAGCCATGGCTTCCTGCCGGCCAGTTACATCCAGTGCATCCGACCGCTGTCACAGACGCCTCCGCAGGGGAAAGCACTGTACGACTTCGAGGTCAAAGACAAAGACCAGGACAAAGACTGCCTGACCTTCACTAAG

Function

symbol description
sh3rf3 Enables ubiquitin protein ligase activity. Involved in positive regulation of JNK cascade and protein autoubiquitination.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000206_00666815_00743152.mRNA True 747 mRNA 0.60 2 666815 743152

Neighbor

gene id symbol gene type direction distance location
CI01000206_00571550_00572992 NA coding upstream 93526 571550 ~ 573289 (+)
CI01000206_00537962_00541275 NA coding upstream 124665 537889 ~ 542150 (+)
CI01000206_00475810_00481198 LCP1.S, LCP1 coding upstream 185593 475810 ~ 481222 (+)
CI01000206_00426915_00452327 NA coding upstream 213709 426794 ~ 453106 (+)
CI01000206_00385497_00393583 R3HDM1 coding upstream 273232 385497 ~ 393583 (+)
CI01000206_00748542_00751311 NA coding downstream 5390 748542 ~ 751571 (+)
G389730 NA non-coding upstream 60582 603973 ~ 606233 (+)
G389769 NA non-coding upstream 69701 596915 ~ 597114 (+)
G389729 NA non-coding upstream 73928 592305 ~ 592887 (+)
G389764 NA non-coding upstream 111539 555061 ~ 555276 (+)
G389759 NA non-coding upstream 139060 527097 ~ 527755 (+)
G389774 NA other upstream 58750 606335 ~ 608065 (+)
G389725 NA other upstream 82917 579831 ~ 583898 (+)
G389767 NA other upstream 101146 561145 ~ 565669 (+)

Expression


Co-expression Network