G389725


Basic Information

Item Value
gene id G389725
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000206
NCBI id null
chromosome length 757353
location 579831 ~ 583898 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU446171
ATGGATGGATTTAAAATACTGTCTGAGGCTGATTTTTGCTCAGTGTTCAGAACAACAGCGGCCTGTTTTTCCGTTCATTATAGGTCATGGAAATTTAGATTTTAGTCAGGGAAAAGTCAGGGAATTTGACATTTGGCTTAGAGTGGGAACCCTGTATATATATCTTTTGTAACATTATAAATCTTTTGTAGTGTGAGATAAATCAGGTGTCTGTCGTCATCTCACTGTAAATACTGTATATAGCGCTCAGCAGTGTCTGTGCTGCACGTGTGTTCGTTTCTGTCTCTCATGATGAGTAACAAGAGTTTGTTTGTGCAGCTTAATGAGGTCAGTGAGCAGAACAGGAAGTTGGAATGTCAGTCACGGAAAGTTCAAGCTCGGCTGGAGAACCTGCAGAGAAAGTACGAGTCCTTCATGACACACCGGGGCCGAGAACCTGCCGTTCCCAAAGCCTGCAAACCAGAAAATCCTCCATCAAATAAAGCAGCAGGCAAGGCCGGCGTTCACGGCCCCTCAGTGAAGCTGCTGGCGCTTCTGTTGGATTGGGTCGTGGACGGTCAGCTGGTAGAGGTCAGAGACGGGTCGAACCTCACCGGCCCCGAGCCATACGCCACACTGCGCCCTTCACTGCATGAGAGATGCGCCAAGGCGTTGCCTGTGCTGGTGGAGCAGCTTCATCAGACCCCTGCGATGGAGCCGTCACTGCTGCTGTCTCTGCTGCGCTGCGTCTACTGCTGCCTGCTGCTTCTGGAGCGCAGCTCACAGCACACTGTCCTGACCTCCACGCTGAGGAGGCTGGGTGAGGAGGTGTCTCGTGGATCATGTGACCCGGCTCGCCCGCGGGCCTGTCCGCTGTTTAAGAGCTCCTGTCTCCACACGCGCTTCCTGTGCAGCCTCATCGTCATCAAAACCATCAGTCAAGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU446171 True 924 TUCP 0.52 5 579831 583898

Neighbor

gene id symbol gene type direction distance location
CI01000206_00571550_00572992 NA coding upstream 6542 571550 ~ 573289 (+)
CI01000206_00537962_00541275 NA coding upstream 37681 537889 ~ 542150 (+)
CI01000206_00475810_00481198 LCP1.S, LCP1 coding upstream 98609 475810 ~ 481222 (+)
CI01000206_00426915_00452327 NA coding upstream 126725 426794 ~ 453106 (+)
CI01000206_00385497_00393583 R3HDM1 coding upstream 186248 385497 ~ 393583 (+)
CI01000206_00666815_00743152 SH3RF3 coding downstream 82917 666815 ~ 743152 (+)
CI01000206_00748542_00751311 NA coding downstream 164644 748542 ~ 751571 (+)
G389764 NA non-coding upstream 24555 555061 ~ 555276 (+)
G389759 NA non-coding upstream 52076 527097 ~ 527755 (+)
G389753 NA non-coding upstream 68674 510929 ~ 511157 (+)
G389728 NA non-coding upstream 74017 505517 ~ 505814 (+)
G389684 NA non-coding upstream 235627 343788 ~ 344204 (+)
G389729 NA non-coding downstream 8407 592305 ~ 592887 (+)
G389769 NA non-coding downstream 13017 596915 ~ 597114 (+)
G389730 NA non-coding downstream 20075 603973 ~ 606233 (+)
G389752 NA non-coding downstream 62553 646451 ~ 689149 (+)
G389767 NA other upstream 14162 561145 ~ 565669 (+)
G389774 NA other downstream 22437 606335 ~ 608065 (+)

Expression


Co-expression Network