CI01000225_00035782_00036621 (CLDN8)


Basic Information

Item Value
gene id CI01000225_00035782_00036621
gene name CLDN8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000225
NCBI id null
chromosome length 750214
location 35116 ~ 36621 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000225_00035782_00036621.mRNA
ATGGCAAGCGGTGCCCTGGAGATTGTGGGAATGTGCGTGACCCTGATCGGGCTCATCGGGGTGGCGGCCAGCACCGGGATGCCAATGTGGCGGGTGACGGCGTTCATCGGGGAGAACATCATCGTGATGGAGACCCGCTATGAAGGCTTGTGGATGAACTGCTACCGACAGGCCAACATTCGAATGCAGTGTAAGGTGTACGACTCCCTGCTGGCGCTGTCCCCGGACCTCCAGGCTGCACGGGGGCTCATGTGCTGCTCTGTGGCACTGACCGGTCTGGGTCTACTGATCGCCATCGTCGGGATGAGGTGCACGGCGTGCATTCAAGACAACGACCGTGCCAAACGTATGATTTTGATCATCTCCGGTTGCATGATCCTAATGGGCTGCTTCTGCTGCCTCATTCCCGTCTCCTGGACCGGACACGCCATCATCCAGGATTTCTACAACCCCTTGCTCATCGATGCCCAGCGCAGGGAACTCGGGGAGGCATTGTACATCGGTTGGGTGTCGTCAGCCTTCCTGTTTGCCGGCGGTTGCATATTCACCTGCTGCACCGGACCCCTGGACAAGGGCCCAGACCCAAGGTACAGGTACTCCAGGAACGCACCCTATGTGGCCTATCAGCCGCAACCGGTGACCTTCCACCCGCAAGCGCGGTCGGAATACAGCCATCTGTCTGGACCACCGTCATTCATTCAGACGTCGTACCAACCATCCAGACAGCAGTCATTCGTTCAGCCTTCCAGACAGCAGTCATTCATTCAACCTTCCAGACAGCAGCCGTTCATACAGCCGTCCCGACACCCGTCCGCCCGCAGTGCCGTGGCTTATCTCTGAAATCCACAGGCTTGTGTATTTGAGTTTCTGTCTGTTTGTGTGTGTTAGAGAGAGATGGAAAGAATGGACATCTAAACAAAGGTTTTATAAAAAAGAAAAAATTATAAAATTGTAACGTTTAAATGGTTTTAAATGTAACAAAGTTAGTCGTACATTTCATTTTTTCCAGTTTCATTCCTGGGAATATTTTTGATAGAATTTAAATACTGTTTCTTCTTTGGCTTTTTAAATATATAAGAGCAGATGAGTGACAGGAAGGACAGGCTTCAAATTAAAAATATATGAACTTTTAAAAAAACCAACATTTAAATGGTTTCAAATGTAAAAAAGTTGCTTGTACATTTCATTTTTTTTCCCCCCGTTTCATTCTTTGTTTTTGATTACATTTGAATGTCAATTCTACTTGTTGAATGTCAATTCTGCTTCTTGTTTTTTTAAACTATGTAAGTAGGAGGACTTTGAGAACTGTGACTGAGATAAAGATGAAGAATTGTTTTTAGTTTTTTTTGTTGTTTTTTATGATTGATCATACCTCAGGGCATTGTAAAGTGTGTCACTTGAGGTATTACTTCAAAGCTGTCTAAAACAGAATTGAGGAAAAAAGTGTTTAATATTCAAATATTTTTGTAAATATCAAAGCACAAATCAATGATTTTAATCAATAAA

Function

symbol description
cldn8 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Located in endoplasmic reticulum and plasma membrane.

NR:

description
claudin 8b

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000225_00035782_00036621.mRNA True 1506 mRNA 0.45 1 35116 36621

Neighbor

gene id symbol gene type direction distance location
CI01000225_00031098_00032138 NA coding downstream 2978 30596 ~ 32138 (-)
CI01000225_00002259_00026753 NA coding downstream 6426 2144 ~ 28690 (-)
CI01000225_00041381_00042262 NA coding upstream 4378 40999 ~ 43116 (-)
CI01000225_00044417_00045162 NA coding upstream 7634 44255 ~ 45162 (-)
CI01000225_00052354_00104366 TIAM1B, TIAM1 coding upstream 15471 52092 ~ 106151 (-)
CI01000225_00111148_00126263 NA coding upstream 73380 110001 ~ 128097 (-)
CI01000225_00166452_00178904 NA coding upstream 127648 164269 ~ 178904 (-)
G395114 NA non-coding upstream 150221 186842 ~ 187202 (-)
G395123 NA non-coding upstream 156689 193310 ~ 194560 (-)
G395142 NA non-coding upstream 183843 220464 ~ 234314 (-)
G395150 NA non-coding upstream 212600 249221 ~ 249430 (-)

Expression


Co-expression Network