G395830


Basic Information

Item Value
gene id G395830
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000229
NCBI id null
chromosome length 388777
location 209767 ~ 211380 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU453641
CCAAAAACAGAACAGGGCACGTGATGCTTCACACCGCAGAGATTTCAGGCCTGATCACAGTTTGAGACACTGTTGAGATCTTTTCTGGAACTCTTGAAGAAACTGCAAATCACATTTGGGATTTTTCTTTACTATGCGTCAGGGGTTTTCCGAGTGTGTAAAGTACTCATGCCAGCTGGACCAGGTGCTCGTCATCAGATATAAAACATACAGTTGCCACGGTGCAGAAAGGATGACGTCATCTATGAAGCCATAGCAACCGTCTCCTCCACACACACACGCACAGTTTCTGACTGGGGAGCAGTCACTCAGTGACTCACACTTTTCCTTTTCCTCAGCCAGATTTTGGAAAGAGAGGCTTGAGGAGAGGAGGAAGACGAATCATCTGGCGATTCCAGGGAAAAGAGGAAACGATAGAAAGATCACGGCTGCACTCTTAAAGGAACAGTTCAGACAGTGATCATTCTGTCATTGTTTACTCTCTCTCTTGTCGTTTAAAGGGGAACATTATGCCCTTTTCACAAGATGTAATATGAGTCTCTGGTGTCCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATAGCTTGTCAAATTTACCCCTATTTGGGTGTGAAAACACGGTGCAAGCTCCTTTCCAGAAGAGGGTGGAGCTTTAACGGCTCGTGCTTCATTTGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGGACGTTTCTGAATGGTTAGTGGATACATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCCACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGTGTTGAATTGACCCTCGTTTGTGAAGCAGTCCGGCGTAAAATGACGACAACACTTTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCCCGCCCTCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTACATTTTAGGGTTAGTGATGTCACCAATCCCAAGAAGCTCGTTGTAGTCCCTACCAGCTGTTTGTTGTAGTCCTTAAACAGAGAATTCTGTAAAAGAAAATATCTCCTTTTGCATTGAACTTTGAGCGTCGTAACTTTGCAGATGTTGTTTATGATCAAACAGCAACATTAGACACTAACTAAAGTTAAAAAAGTCAAATCATAATCAAGGACCCCTTTAAACCTTTAAACAAAAAGCAGAACATTCAAACTGATCTTATTTGTACAATGAAAGCAGTGAGCAGGGGCTGTCGAGATCTAAAAGAGAATCATAACAGTAGCTCAGATGATTTACATATGACAGCTTTGTACAGAAAACATAAATATCATCTGTTGTGTTCCACAGAAGAAAGCCACAAAGGTTTGAAACTTGGTTCCGAACTTTATTTTAAAAAGTAACATTTCACCCAGTTCTTCATTTTCTCGGCCTAGTAAACGATGACAGAATGATAATTTTTGTGTGAAATGTTTCTTTCAAAATAAAGTTTAGAATCATTCAGAATCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453641 True 1614 lncRNA 0.42 1 209767 211380

Neighbor

gene id symbol gene type direction distance location
CI01000229_00161103_00173718 GOLGA2 coding upstream 36049 161103 ~ 173718 (+)
CI01000229_00122889_00158667 NA coding upstream 51062 122847 ~ 158705 (+)
CI01000229_00052137_00112907 NA coding upstream 96828 50616 ~ 112939 (+)
CI01000229_00276495_00285291 CIZ1A coding downstream 65115 276495 ~ 285291 (+)
CI01000229_00285850_00289175 NA coding downstream 74470 285850 ~ 289772 (+)
CI01000229_00297413_00299522 NA coding downstream 85605 296985 ~ 299537 (+)
CI01000229_00310413_00314707 SURF4 coding downstream 99033 310413 ~ 314934 (+)
CI01000229_00348539_00352001 NA coding downstream 137159 348539 ~ 352891 (+)
G395878 NA non-coding upstream 1976 207591 ~ 207791 (+)
G395826 NA non-coding upstream 13210 191143 ~ 196557 (+)
G395823 NA non-coding upstream 21132 173953 ~ 188635 (+)
G395880 NA non-coding downstream 3538 214918 ~ 216695 (+)
G395824 NA non-coding downstream 7454 218834 ~ 220028 (+)
G395883 NA non-coding downstream 11836 223216 ~ 223955 (+)
G395884 NA non-coding downstream 15487 226867 ~ 227359 (+)
G395885 NA non-coding downstream 16131 227511 ~ 227733 (+)

Expression


Co-expression Network