G395880


Basic Information

Item Value
gene id G395880
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000229
NCBI id null
chromosome length 388777
location 214918 ~ 216695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU453698
TAACAACCCAGTGTTTGGGTAGTTTTTGTGTTACCCAGGGGTTGAGTTATTTATCGCAGGCTTTTTGCAACCTCTTCAGGAGAGAGCAGTGCAGCTCCGTCAAATTGGTGCATGTCCTCGGTAAAATACAGGTTTGTGTACCTTTTTATTTTATCTAAAAAATTTTTATTGTTCTGTATATCATTTAATTTTAAGTAAAGCAACATACAGAGGCACGATATGAGTCACCTAAACGAGTGTCGCTGCTTTGAAAGTTGATGCTAAACTAGTCACTACTCCACTCTCACTCTCCAAACTCTCAGATATCATTTAGTGAACAAAAAAGACTGATATTTATTATTTAAATCTTTTGCCCCAAAAGAAGCACATGAATAGGGTTAATTTACACAAGCCATCCAAACAAACTGATCTAATAAAATGTTCTAAACTGTAAGACTATCTGCGCATTCAAATGCAAAGTAAATACAGTAATGTAGCATTTGGAAAAGCTCCAATGAAAACAGCTGAAATACTGACGAGTTACAAAAAAGTCTACTTTAAGTGATTTTCCCCCCTGCAATGTAAAGCCAAAAGCCTTTTGCTGAGTTCATACAGTATGATTGGAAAGAAAAGACTGTCTATGGTTCAACAAAGAGAAAGAAGTACGAAAGAAAAGAAAAAAAAGAATCATCAGCACCGCAGGAACGTCAGCGACTCAGTTCTGGTTTGAATTGAGCGTCTCAAACTCTCTGAACACACGCTAATGTCTACAACAGCGGCGGCGCAGGCATGTTAACTGCATTAACCCCTCAGCATCCTGCTTTAAAGTCTGCAGGCAAACAGCCTCACACGTAGGTGGAGAGGACGATGGTCGGCCCCCCATTGCCAAGGTCAAACGCTGACATCCTACATGCACTTCTGCATTTTGTGGGCTTGGTTTTATCTGTTGGGGCAGGAAGGAAGCAAACATTGCATTGCATTCGCATACTTGCATAGAATGTGCGCTTGCATCAAACAGCTGCCTCACTGAATTACATTTGGCAGATGCTTTTAAACAAAGCGACTTGCATTGCATTCAAGGCAAACATTTGATTCCCTGGGAATTTTGGGGATTTGCCAACATCTCATGCTGGGTTTTTAAGACACTGTGTTCTGATTTATTTTAAATAAAATGTAAAGAAATGTAAATATATAATTTGTGACAAGAATTGTCGAGACTGTAAAAAATCTCTAATCTGAACGTCAGACTTTAGAGTGTGTTTGGGTTCGCAGACAGAAATAAAACTTGAGTGTGTCGAGCCAGAATGAACTGAACATACTGAACTCTATCATTGGCACCCTCATAAAGAACATAAATGTTCCCGACAGCCTGGAGAGGTTTAATGAGAGGACGATGGTTTGTTAGCAGTGAAGGGAGGTGTCACAAACAGATGCTTTTTCTGGTACTTCACAGTAGCAGCAAACACGGTCGTGAAGCGTCTTTGAGAGCCCCTGGTGCAGGTTTACCACATTTCCATTCTCTCATGCTTAATATTTATAAAATAATAGTGTTTCCCAAAGGATTTGTGACACTATAGGGGCTGGACCTTGGTTCCTCTCTTGGGGGTATTAGAGTTTCACTGGAAACGGTTTAGTATGTAATTCAACACCACACTGACTGCAAAATTCACATAAACCAGATTTCAAATAAAACAAAATTTCAGATAGAAAAAGGGTCCTCTGTTTGATGTCAAACTTAACCTAATAGTGCATGTGATTACATAAATTAATAATAAATTAATCAATTTACAAAAGCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453698 True 1778 lncRNA 0.39 1 214918 216695

Neighbor

gene id symbol gene type direction distance location
CI01000229_00161103_00173718 GOLGA2 coding upstream 41200 161103 ~ 173718 (+)
CI01000229_00122889_00158667 NA coding upstream 56213 122847 ~ 158705 (+)
CI01000229_00052137_00112907 NA coding upstream 101979 50616 ~ 112939 (+)
CI01000229_00276495_00285291 CIZ1A coding downstream 59800 276495 ~ 285291 (+)
CI01000229_00285850_00289175 NA coding downstream 69155 285850 ~ 289772 (+)
CI01000229_00297413_00299522 NA coding downstream 80290 296985 ~ 299537 (+)
CI01000229_00310413_00314707 SURF4 coding downstream 93718 310413 ~ 314934 (+)
CI01000229_00348539_00352001 NA coding downstream 131844 348539 ~ 352891 (+)
G395830 NA non-coding upstream 3538 209767 ~ 211380 (+)
G395878 NA non-coding upstream 7127 207591 ~ 207791 (+)
G395826 NA non-coding upstream 18361 191143 ~ 196557 (+)
G395823 NA non-coding upstream 26283 173953 ~ 188635 (+)
G395824 NA non-coding downstream 2139 218834 ~ 220028 (+)
G395883 NA non-coding downstream 6521 223216 ~ 223955 (+)
G395884 NA non-coding downstream 10172 226867 ~ 227359 (+)
G395885 NA non-coding downstream 10816 227511 ~ 227733 (+)
G395899 NA non-coding downstream 11490 228185 ~ 294002 (+)

Expression


Co-expression Network