CI01000299_00097393_00132755


Basic Information

Item Value
gene id CI01000299_00097393_00132755
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 97393 ~ 132755 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_00097393_00132755.mRNA
AGGGCAATCAATAAAGCTCTGTTGTGTTTGTGTTTTAAAGGTTTATGCCACTGCAGGTTGGTGACCGTGTCTAGGGACCCTTTGCTCCGGGTCGAGGGCCAGCCGCTGTCTATTCGCTGTGATGTATCGGACTACGAGGGCCCCAGGGAGCAGGACTTCGATTGGACAGTAACGCGAGGGACAGAATCCATCAAAGTGATCTCAACATTGGACGAAGCATTTTCAGATCACTCTTTTCAGGACCGCATAAGGAGCGGGGACATTAGTGTTTCACGACTAGAGGACAACGCAGTGGAACTGAGAATTCAAGAGGCTCGAGTTAGTGACAGCGCCACCTACCGCTGCAGTACTCCAAGCACAGATTCGGTTATAAGTGGAAACTATGATGCAGATGTCCAGCTGCAAGTTGTTCCTAACAGTCTTATTGTGGCACCCGACACCCCAAACCCTGTCGTTCCTGAGGGAGGATCCATTAGACTCCTGTGCAATGTCTCCCGCAACTTCATCGAAGGAATTTACCTGTCTTTAACCTGGTCAGTCAAGAAGGGCTCGTCTCTACTAGAGGACCTGCTGACCTTTGGCCCAGATTTGAGTATGACGGTTGGCGACAACTTCACGTGGCGCTACACAGATGGCGGGATGCGTCTAGAAATGGGAAACGGAGTCTCGCACAGTCTAGTGCTCTCCAGAGCGATGCCGGAAGATCAAGGGATGTACGTGTGCTCGGCCAGACTGTGGACGAGAGAGCAAGGAGTCTGGAACCGAATTCAGGAGAAGACAATGGAGATGGGGGAAGTGACTGTCACTCCAACAGCGAACTCCCTGACTGTTCACGTGCAGGACGGCAGCACATTATCCACAGGAGAAACGCTGCTCCTCACCTGTTCGGTCTCTGCTGACTCCGCGGCGTCCATTGACCTGGAAGTGACGTGGCTGTTGAACGCCAGCCGTACTCTGGCCCACCTGAGTCGTGACGGCGTGCTGACCAACACATCTGATGTGGTGGACGTGAGACGCTTGGGGAAGTGGGATTTCCAAATCAAAGTTCACGGTGTGGAGATGTCTGACGCTGGACTCTATTCATGTAAAGTGAGCATGTGGGTTCAGCACGATAGTGGACGATGGTACAAGGCTGCGGAGAAGATTTCTGACCCTGTACGAGTTCACGTTATTAAGCAAATTCCAGAATACACCGTTGTTCTAAATTCATCTGTGAACGCAAAGTTCTTCGGTGAACCGACGGAGTTGGAATGCAAAGTTACGAACGTGTCCAACCTTCGTAGCGGACAGTTGGGAGTGTCGTGGCTGTACAGAGACGCTCTGCCCGGTAACGTTCCAGTATCTACTCAGACTATCGCGTCATTAGATGAGAACGGAACCCTTGTGCCAGGCAAGATGTACAAGAGCCGCATACAGGCAGGGCTTATTACAGCGACCCGAACGGAACCTTCCACATTCAAGCTCCGCCTCCTTCACACGACTGACGCAGACGCTGGAGAATATGCATGTGCCGTAATGGCGTGGATCCCGACTCATCATGGGAACTGGAAAAAGGTTGCAGAGTATCTGACCCCAGCGCTTAAAGTCAGCTTTGCTAACAAGCGTCCTGTTCTTGGTGTCGTAGCCCGTCGTCTCCGTGAAGCTAAGGCTACTGGCTCCACATTTGAGATGAGCTGCCAGGCCAATATCCAAAACCTCCCACCGGGAACCGCCTTTTCCATCCTCATCCTGTCCGAGGAGGCCGTCGGGTCTCCCAGCCGCAAACTCGCCTCGCTGGATCCTGATATGGTTCTTCAGCTGGAGGACTGGGGTGAGCCGGGCCGACGGGATGGCCTGATGCTGGTGAAGACCGGGAAGAGGGAGTTTCAATTTCGTATCCAAGCGGTGCAAGTGACCGATCGCGGGTTCTACTCATGTGAAATGAAAGCCTGGACGAAACCGGTCGGGGAAGACTGGGTCGAGATGGCCAAAGGAGTGTCCAATAAGGTTCAGATCGCTTTTGCACACAAAGGTCCCACGTTTGATGTGTCCATCAATTCAGACACGACGAGTGTTTACCCCTGGGAAACTGCTAAGATGGTGTGTGATGTCAGTGTTAGCGGCACATCTCCCACTACAGGCGATTTTGTGATTTCTTCCCCATCAGATGATGTAGCATATGAGATGAAGTGGTTTCTGAGTCGTCTGAGGGGTTCCAGCAGCCTGTCCCTGCTAGCCAGTATGGACCGCTGGGGTGTCGTGCACAAAACTCTTCGCAATGACAGCAGCGACTGCAGCCTGGAGCGTCTGGGACCCAGAAGATTCGCCCTAAACATTCACAGCACACAGGACAGTGACGCTGGCGACTATCACTGCACCGCCACACCCTGGATTCGCTCAACTGCCACCGGGCTCTGGAGCAAAGCGCAGGAGGTCTCCTCACAGAGAGTGTTCCTCAACGTGAAGTTCGCATTGTGGGACTCAATGAAGCTGCCTTTACTGTATGGGATCTGCGCTTCAGTAACTGTAGGCTTCTTTTCTCTCGCCCTGGGCCTGGTCTGTGCTCACTGCTGCTGTAAAACCACTACACCTACTCCACGCTCTCGCAACAAACTCATGGAGCTGGAGCTGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_00097393_00132755.mRNA True 2613 mRNA 0.53 8 97393 132755

Neighbor

gene id symbol gene type direction distance location
CI01000299_00082987_00089134 NA coding upstream 7799 82723 ~ 89594 (+)
CI01000299_00069742_00072011 NA coding upstream 25309 69642 ~ 72084 (+)
CI01000299_00053877_00063101 NA coding upstream 33893 51951 ~ 63500 (+)
CI01000299_00042567_00045857 NA coding upstream 51202 42454 ~ 46191 (+)
CI01000299_00013442_00032151 NA coding upstream 64319 12783 ~ 33074 (+)
CI01000299_00151569_00153623 SLC5A3A coding downstream 18764 151519 ~ 154472 (+)
CI01000299_00255175_00294177 MBNL2 coding downstream 122420 255175 ~ 294177 (+)
CI01000299_00315123_00328550 RAP2B, RAP2C, RAP2A, RAP2AB, RAP2A.S coding downstream 182368 315123 ~ 330163 (+)
CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding downstream 212287 345042 ~ 362086 (+)
CI01000299_00419297_00444862 NA coding downstream 286542 419297 ~ 445888 (+)
G403952 NA non-coding downstream 417746 550501 ~ 550742 (+)
G403965 NA non-coding downstream 450001 582756 ~ 583123 (+)
G403971 NA non-coding downstream 470077 602832 ~ 603583 (+)
G404016 NA non-coding downstream 516660 649415 ~ 649814 (+)
G404137 NA non-coding downstream 937853 1070608 ~ 1075893 (+)
G403578 NA other upstream 25122 35462 ~ 72271 (+)
G403609 NA other downstream 231384 364139 ~ 410788 (+)
G403972 NA other downstream 472115 604870 ~ 606350 (+)
G405609 NA other downstream 3021842 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3998503 4131060 ~ 4133941 (+)
G405842 NA other downstream 4162778 4295533 ~ 4320141 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000042 si:ch211-132g1.7 coding NC_007112.7 CM002885.2 1941031 ~ 2000357 (+)