CI01000299_00419297_00444862


Basic Information

Item Value
gene id CI01000299_00419297_00444862
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 419297 ~ 445888 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_00419297_00444862.mRNA
ATGGCCGCCCTAGAGCGCCGTGTTGCTGCTAATGGGTTTGGAGCACCTAGCCAAGCCCGGTCCAGCAATGTCCAGCGACTCTATGGAAGCCGGCTAAGTGCTAATGACCACAGCAGCCCAGTTCATATGATTGATGGTTCCACTAGTAGTGGAACGGAGTCTAGTGATACAGAGTCAGATGCAGGCAGCAACTCTTACAGTCAGCCCCTTGTCTATGGAAACCCTGGGGCAGCCAATTCCTCCCCTATGCCCCGAAGCAAGTTCTCCTTTGGCAGTCTCCAACTGGAGGACGAGGGCCAAGGAGGGAATGTGTTATATATCTCGGCAGTGTCCTCAGGCGGAAATCCCAGACTGGGATGGTGTGACTCACTCATGTCTGGATCCCGATGTGGTGCTGTCAGCCATAGTCCATTTCTAAACACAATGTGTTGTGCAGCTTCACCCCTTGGCAATGATCTTGATAAATCAAGAATCTTTACTTGTAGTGTTAAGGATAAAAATGTCAAAATTACCCTGCAGAAAAGACCAGCTTACACTGGTCCAGTTTCCAAGAGCCCTCAGCACAACGAGTCTCCGTCTGCAGGCAGGGTGATGGTAAACGGCCAGAAACAGAGTCTCAGCACTGGCCAAAGTCCAGATGGACGGCAGCCTTCTCCTCTCACCAGCCCCTTACTGACCGACGCCGGCTTCATCCGCACAGACGACGAGGACGAGGTTCGGAGGAAGAGGTTCCCAACTGATAAAGCGTACTTCATCGCCAAAGAGCTCCTGACTACAGAGAGAACATATCTGAAGGATCTGGAGGTCATCACTGTGTCCTTTCAGAAGTCCATTGGGAAGGATGAGGCTATGCCGGATTCCTTGAGAAATCTCATTTTTGCCAATTTCGAACCGGTGTACAAATTCCATGAGACCTTCCTGAAAGAGGTGGAGCAGCGACTGGCTCAGTGGGAAGGCAGATCGAACGCACACATCAAAGGAGACTATCAGCGCGTTGGGGACGTCATGCTGAAGAATATCCAGGGTTTGAAGCTGCTGACAGCTCATCTTCAGAAGCATTCAGAGGCGTTGCTGGAGCTGGAAAGGACGTGTCGCTCTTCCCGAAAGCTGGAGGGTTTGTGCCGAGACTTTGAGCTTCAGAAGGTCTGTTACCTGCCACTCAACATCTTCTTCCTGCGGCCGCTGCACCGCCTCATGCACTATAAACAGATCCTGGAGCGCCTCTGCAAACACTATCCACCGACACACGACGACTTCAGAGACTCGCGAGCTGCGCTTGCTGATATTTCTGAGATGGTTGTGCAGCTTCACGGCACTCTCTTTAAGATGGAGAACTTCCAGAAACTTCTGGAGCTCAAGAAAGACCTCATTGGCGTCGACAATCTCGCCATTCCTGGACGGGAGTTTATCAGGCTTGGTTGTCTCAGCAAACTCTCTGGAAAAGGTCTACAGCAGAGAATGTTCTTCCTGTTCAATGATGTTCTGATGTACTCGAGTCGAGGGATGACGGCCTCTAATCAGTTCAAAGTGCACGGACAACTTCCTCTTTATGGCATGACGATCCGTGAGAGTGAGGACGAGTGGGGCGTCCCGCATTCATTCACTCTGTTTGGACAGCGACAGTCTGTCGTCGTGGCCGCCAGTTCAGCGTCTGAGATGGAGAAGTGGGTGGAGGACATCAAGATGGCCATTGAACTAGCGGACAAATGCAACGGACCCTCGGCTGAGATCCTGTCCAGTAGTTTCACTGACAACAATGTTAATGAGTGTGGCTTCAGTGTTCAAACACAGTTTGTGGACACTCTTCACTGTTTTAACAGAGCATTTGAAGCAGTTCTCACTGTTTGCAGTGGATCATGTTTCACAGAATCCCCTGAGGAATCTAGCGCCGACCAGGAATCAGAAGATGACCTGAGCGCCTCGCGGACGTCTCTCGAGCGGCAGACGCCTCACCGTGGTAATACCACGGTTCATGTGTGCTGGCATCGCAGCACCAGCGTGTCCATGGTGGATTTTAGCGTAGCGTTAGAGGACCCTAGTCCAGTCAGTCTCTCAGAGGCTCCCATTGCGGCCCCGCTCAGGGCCCAGGGGCCGGTGTCTCTCTCTCTGGTGTGTTGGTATCGTGTCCAAAGCCTCTCCTTTAGTGAAACCTGCAGGAATAGAGAGAATCAGCTGTCTGGGAATCTGCTGAGAAAGTTCAAGAACAGCAACGGTTGGCAGAAGTTATGGGTGGTCTTCACCAACTTCAGCCTGTTCTTCTACAAAACACACCAGGATGAATATCCTCTGGCCAGCCTTCCTCTGCTGGGATACTCCATCACCATTCCCTCAGAGTCCGAGAACATCCATAAAGACTACGTCTTCAAACTCCATTTCAAATCACACGTCTACTATTTCAGATCTGAGAGCGAGTACGCGTTTGAGAGGTGGATGGAGGTGATCCGCAGTGCCACTTGCTCTTCCAGTCACATCCGCTCCTTGAGCCGCAAAGAGCCGCACGCCTACTGACCAAAGAGACCTTCGGACCGCCTGCCGAAACACCAACACACACACACACACACACACACACTGGCCGTTTACGTCAGGTTCTCAATCAGGTTCTCCTAACACACTTTAACATATTTCTTACGGCAGCGGGTTTGAGCAGGAATTGTTTCATGTGCTATATCGTCATTTTACTTTATAGAAAACAATCAGATTTTGAATGGGTTCACATGTGAAGTTTTTTGAGAATATCAAGGTCAGAGTCCAAAGAACTACTACAGTATCATCACAACATCGCACGATGGATAGATCAGCAGGTAACAGTCAAACACTTCCAGTTTTGCTGTTTGTTTTAAATGTGCAGTAAGACACGATATCATAGTAAGTAAACAACAGTCCATGTTCATGAAATGCAACTCATTTGTGTAAATTGTCCGTAAAATTGGCAAGAATGCTTTCAGGAATGGTTTTATTGAATGGTTATATGCGATGATTTATTCTTAAGAATGTTTTTGCGAATGTTTTATTGATTTGTACGTGACTGTTTATGTGCGAGAGCTTTTATAAATGGTTTATTGGGTGCTATTGTGTAAGTGAAACCGGTGTCATTGAGTTGAATGCAAACTATTTACGAACAGTTTACACATGAAATTGTTCTGCTTGTGTTTAATGAACTAAATGCCTGTAAAAGTAAGACGAGAAATTCAATCTCGGGACAGTTTTTAACTGTAGTAACACCACAGCTTTAATTACTGATGTTTATGAAGAATTGTCACCTTCTGTCTAAAAAAACTGGTGAAAGATGTTCAGGTCATATTTCACCCCAAAATCGAAAGGGAAAAAATTAAGTTTTTTGTTTGCATGAAGAAAATAAAGCCTATTTTAGGACCATTTTATTTTGTATTTTTTTTATTGCATTTTTCATGACAATTTGCCCTGAAATTTGCATTATTATTTATATATATATACACACACACACACACACATATAGTACAATAGTTAGATTACATAATGGTATTATTTGATGGATTTATACTGATTTTAATTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_00419297_00444862.mRNA True 3534 mRNA 0.47 18 419297 445888

Neighbor

gene id symbol gene type direction distance location
CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding upstream 57211 345042 ~ 362086 (+)
CI01000299_00315123_00328550 RAP2B, RAP2C, RAP2A, RAP2AB, RAP2A.S coding upstream 89134 315123 ~ 330163 (+)
CI01000299_00255175_00294177 MBNL2 coding upstream 125120 255175 ~ 294177 (+)
CI01000299_00151569_00153623 SLC5A3A coding upstream 264825 151519 ~ 154472 (+)
CI01000299_00097393_00132755 NA coding upstream 286542 97393 ~ 132755 (+)
CI01000299_00689032_00727635 NA coding downstream 243018 688906 ~ 727836 (+)
CI01000299_00795673_00796901 GPC6 coding downstream 349785 795673 ~ 797157 (+)
CI01000299_00826470_00828773 NA coding downstream 380545 826433 ~ 828960 (+)
CI01000299_00862803_00911972 GPC6A, GPC6 coding downstream 416915 862803 ~ 911972 (+)
CI01000299_01036243_01046776 NA coding downstream 589149 1035037 ~ 1047603 (+)
G403595 NA non-coding upstream 256502 60419 ~ 162795 (+)
G403952 NA non-coding downstream 104613 550501 ~ 550742 (+)
G403965 NA non-coding downstream 136868 582756 ~ 583123 (+)
G403971 NA non-coding downstream 156944 602832 ~ 603583 (+)
G404016 NA non-coding downstream 203527 649415 ~ 649814 (+)
G404137 NA non-coding downstream 624720 1070608 ~ 1075893 (+)
G403609 NA other upstream 8509 364139 ~ 410788 (+)
G403578 NA other upstream 347026 35462 ~ 72271 (+)
G403972 NA other downstream 158982 604870 ~ 606350 (+)
G405609 NA other downstream 2708709 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3685370 4131060 ~ 4133941 (+)
G405842 NA other downstream 3849645 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 4043930 4480553 ~ 4493116 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014655 LOC107559785 coding CM030128.1 CM030128.1 25660345 ~ 25698928 (+)